Summary of Acinetobacter baumannii AB

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii AB_TG2032, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AMIL01000334	81	77	2	2	80,072	RefSeq:NZ_AMIL01000334
NZ_AMIL01000321	59	57	0	2	61,422	RefSeq:NZ_AMIL01000321
NZ_AMIL01000107	70	69	0	1	60,946	RefSeq:NZ_AMIL01000107
NZ_AMIL01000315	52	52	0	0	60,021	RefSeq:NZ_AMIL01000315
NZ_AMIL01000118	55	55	0	0	57,066	RefSeq:NZ_AMIL01000118
NZ_AMIL01000077	49	46	3	0	56,404	RefSeq:NZ_AMIL01000077
NZ_AMIL01000303	46	41	4	1	56,205	RefSeq:NZ_AMIL01000303
NZ_AMIL01000308	55	55	0	0	54,094	RefSeq:NZ_AMIL01000308
NZ_AMIL01000001	47	45	2	0	49,541	RefSeq:NZ_AMIL01000001
NZ_AMIL01000108	43	40	0	3	48,713	RefSeq:NZ_AMIL01000108
NZ_AMIL01000309	49	49	0	0	46,908	RefSeq:NZ_AMIL01000309
NZ_AMIL01000313	37	36	1	0	45,542	RefSeq:NZ_AMIL01000313
NZ_AMIL01000284	38	37	0	1	42,904	RefSeq:NZ_AMIL01000284
NZ_AMIL01000264	38	37	0	1	39,031	RefSeq:NZ_AMIL01000264
NZ_AMIL01000078	52	51	1	0	38,752	RefSeq:NZ_AMIL01000078
NZ_AMIL01000275	41	40	0	1	38,090	RefSeq:NZ_AMIL01000275
NZ_AMIL01000034	36	35	1	0	36,399	RefSeq:NZ_AMIL01000034
NZ_AMIL01000226	38	36	0	2	36,242	RefSeq:NZ_AMIL01000226
NZ_AMIL01000325	28	28	0	0	35,499	RefSeq:NZ_AMIL01000325
NZ_AMIL01000316	33	33	0	0	34,682	RefSeq:NZ_AMIL01000316
NZ_AMIL01000033	34	32	0	2	32,984	RefSeq:NZ_AMIL01000033
NZ_AMIL01000320	30	30	0	0	31,772	RefSeq:NZ_AMIL01000320
NZ_AMIL01000323	22	22	0	0	31,538	RefSeq:NZ_AMIL01000323
NZ_AMIL01000015	28	27	0	1	31,086	RefSeq:NZ_AMIL01000015
NZ_AMIL01000333	32	30	1	1	30,519	RefSeq:NZ_AMIL01000333
NZ_AMIL01000079	23	21	0	2	28,891	RefSeq:NZ_AMIL01000079
NZ_AMIL01000243	25	23	0	2	27,893	RefSeq:NZ_AMIL01000243
NZ_AMIL01000293	24	24	0	0	27,331	RefSeq:NZ_AMIL01000293
NZ_AMIL01000050	26	25	0	1	27,030	RefSeq:NZ_AMIL01000050
NZ_AMIL01000329	22	21	0	1	26,881	RefSeq:NZ_AMIL01000329
NZ_AMIL01000297	17	17	0	0	26,771	RefSeq:NZ_AMIL01000297
NZ_AMIL01000022	20	20	0	0	26,477	RefSeq:NZ_AMIL01000022
NZ_AMIL01000024	23	21	1	1	25,432	RefSeq:NZ_AMIL01000024
NZ_AMIL01000067	28	25	1	2	25,226	RefSeq:NZ_AMIL01000067
NZ_AMIL01000096	27	26	0	1	25,150	RefSeq:NZ_AMIL01000096
NZ_AMIL01000128	16	14	1	1	24,857	RefSeq:NZ_AMIL01000128
NZ_AMIL01000304	18	18	0	0	24,471	RefSeq:NZ_AMIL01000304
NZ_AMIL01000314	20	20	0	0	23,985	RefSeq:NZ_AMIL01000314
NZ_AMIL01000007	17	15	1	1	23,877	RefSeq:NZ_AMIL01000007
NZ_AMIL01000233	23	23	0	0	23,838	RefSeq:NZ_AMIL01000233
NZ_AMIL01000205	21	21	0	0	23,651	RefSeq:NZ_AMIL01000205
NZ_AMIL01000028	21	21	0	0	23,450	RefSeq:NZ_AMIL01000028
NZ_AMIL01000089	17	17	0	0	23,365	RefSeq:NZ_AMIL01000089
NZ_AMIL01000289	30	29	0	1	23,225	RefSeq:NZ_AMIL01000289
NZ_AMIL01000112	22	21	0	1	23,174	RefSeq:NZ_AMIL01000112
NZ_AMIL01000273	20	20	0	0	23,063	RefSeq:NZ_AMIL01000273
NZ_AMIL01000319	19	18	0	1	22,903	RefSeq:NZ_AMIL01000319
NZ_AMIL01000063	21	20	0	1	22,781	RefSeq:NZ_AMIL01000063
NZ_AMIL01000150	24	24	0	0	22,729	RefSeq:NZ_AMIL01000150
NZ_AMIL01000344	29	26	3	0	22,578	RefSeq:NZ_AMIL01000344
NZ_AMIL01000029	19	17	0	2	22,093	RefSeq:NZ_AMIL01000029
NZ_AMIL01000306	18	18	0	0	22,057	RefSeq:NZ_AMIL01000306
NZ_AMIL01000310	18	17	0	1	21,760	RefSeq:NZ_AMIL01000310
NZ_AMIL01000347	15	15	0	0	21,054	RefSeq:NZ_AMIL01000347
NZ_AMIL01000341	21	21	0	0	20,727	RefSeq:NZ_AMIL01000341
NZ_AMIL01000353	18	18	0	0	20,660	RefSeq:NZ_AMIL01000353
NZ_AMIL01000053	20	17	1	2	20,150	RefSeq:NZ_AMIL01000053
NZ_AMIL01000215	22	21	0	1	20,092	RefSeq:NZ_AMIL01000215
NZ_AMIL01000277	20	20	0	0	19,788	RefSeq:NZ_AMIL01000277
NZ_AMIL01000068	15	15	0	0	19,733	RefSeq:NZ_AMIL01000068
NZ_AMIL01000018	32	27	3	2	19,704	RefSeq:NZ_AMIL01000018
NZ_AMIL01000302	16	16	0	0	19,397	RefSeq:NZ_AMIL01000302
NZ_AMIL01000055	17	16	0	1	19,390	RefSeq:NZ_AMIL01000055
NZ_AMIL01000070	19	18	0	1	19,116	RefSeq:NZ_AMIL01000070
NZ_AMIL01000322	17	16	1	0	17,949	RefSeq:NZ_AMIL01000322
NZ_AMIL01000054	16	14	1	1	17,868	RefSeq:NZ_AMIL01000054
NZ_AMIL01000295	16	13	3	0	17,739	RefSeq:NZ_AMIL01000295
NZ_AMIL01000052	15	14	0	1	17,328	RefSeq:NZ_AMIL01000052
NZ_AMIL01000027	21	20	0	1	17,318	RefSeq:NZ_AMIL01000027
NZ_AMIL01000038	13	12	0	1	16,941	RefSeq:NZ_AMIL01000038
NZ_AMIL01000139	15	15	0	0	16,304	RefSeq:NZ_AMIL01000139
NZ_AMIL01000335	15	15	0	0	16,204	RefSeq:NZ_AMIL01000335
NZ_AMIL01000299	15	14	0	1	16,202	RefSeq:NZ_AMIL01000299
NZ_AMIL01000330	12	12	0	0	16,146	RefSeq:NZ_AMIL01000330
NZ_AMIL01000065	15	15	0	0	15,837	RefSeq:NZ_AMIL01000065
NZ_AMIL01000194	12	12	0	0	15,822	RefSeq:NZ_AMIL01000194
NZ_AMIL01000312	17	17	0	0	15,803	RefSeq:NZ_AMIL01000312
NZ_AMIL01000080	19	19	0	0	15,571	RefSeq:NZ_AMIL01000080
NZ_AMIL01000117	17	16	0	1	15,535	RefSeq:NZ_AMIL01000117
NZ_AMIL01000075	11	10	0	1	14,479	RefSeq:NZ_AMIL01000075
NZ_AMIL01000030	15	13	0	2	14,332	RefSeq:NZ_AMIL01000030
NZ_AMIL01000283	15	12	3	0	14,231	RefSeq:NZ_AMIL01000283
NZ_AMIL01000340	12	12	0	0	13,997	RefSeq:NZ_AMIL01000340
NZ_AMIL01000137	14	13	0	1	13,762	RefSeq:NZ_AMIL01000137
NZ_AMIL01000346	16	14	0	2	13,601	RefSeq:NZ_AMIL01000346
NZ_AMIL01000326	14	13	0	1	13,465	RefSeq:NZ_AMIL01000326
NZ_AMIL01000178	13	11	0	2	12,951	RefSeq:NZ_AMIL01000178
NZ_AMIL01000352	16	13	0	3	12,802	RefSeq:NZ_AMIL01000352
NZ_AMIL01000051	12	10	0	2	12,785	RefSeq:NZ_AMIL01000051
NZ_AMIL01000037	12	12	0	0	12,781	RefSeq:NZ_AMIL01000037
NZ_AMIL01000090	17	16	0	1	12,758	RefSeq:NZ_AMIL01000090
NZ_AMIL01000056	12	12	0	0	12,465	RefSeq:NZ_AMIL01000056
NZ_AMIL01000331	14	11	0	3	12,309	RefSeq:NZ_AMIL01000331
NZ_AMIL01000103	12	9	3	0	12,253	RefSeq:NZ_AMIL01000103
NZ_AMIL01000238	11	8	3	0	11,069	RefSeq:NZ_AMIL01000238
NZ_AMIL01000061	15	14	0	1	10,773	RefSeq:NZ_AMIL01000061
NZ_AMIL01000143	14	12	1	1	10,618	RefSeq:NZ_AMIL01000143
NZ_AMIL01000130	13	12	0	1	8,520	RefSeq:NZ_AMIL01000130
NZ_AMIL01000005	14	14	0	0	6,503	RefSeq:NZ_AMIL01000005
254 Undisplayed Contigs/Replicons	765	744	21	158	1,020,947

Total:	3,346	3,055	62	229	3,557,150

Ortholog data available?	Yes

Database Contents

Genes	3,346
Pathways	266
Enzymatic Reactions	1,280
Transport Reactions	98
Polypeptides	3,236
Protein Complexes	51
Enzymes	741
Transporters	339
Compounds	1,041
Transcription Units	2,457
tRNAs	55
GO Terms	1,248

Database Version

29.0

Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus/baumannii complex Acinetobacter baumannii Acinetobacter baumannii AB_TG2032
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02471265
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	1221281
Environment	sputum
Host	Homo sapiens
Annotation Provider	NCBI
Annotation Date	2017-11-23
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	4.3
Annotation Comment	Best-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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