Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [1, 2] component of Pathway Tools software version 24.5 and MetaCyc [3] version 24.1 on 09-Jul-2020 18:45:23.
Genome
RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_CP0324026,2835,956942336,800,142RefSeq:NZ_CP032402
Ortholog data available?Yes
Database Contents
Genes6,283
Pathways275
Enzymatic Reactions1,408
Transport Reactions57
Polypeptides5,957
Protein Complexes54
Enzymes990
Transporters409
Compounds1,088
Transcription Units4,542
tRNAs79
Protein Features6,860
Database Version29.0
Sequence SourceGCF_003589885.1
Synonyms Actinomadura sp. YIM 77502
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Terrabacteria group
Actinomycetota
Actinomycetes
Streptosporangiales
Thermomonosporaceae
Actinomadura
Actinomadura amylolytica
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN10022831
NCBI BioProjectPRJNA224116
NCBI-Taxonomy1411117
Environmentgeothermally heated soil
Geographic LocationChina
Collection Date2014-10-25
Annotation ProviderNCBI RefSeq
Annotation Date2019-12-27
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version4.10
Annotation CommentBest-placed reference protein set; GeneMarkS-2+
NCBI Genome Typerepresentative



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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.