Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [1, 2] component of Pathway Tools software version 25.0 and MetaCyc [3] version 25.0 on 02-Jul-2021 11:55:59.
Genome
RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_CP0660492,6482,52863573,152,123NCBI Assembly:GCF_016127855.1
Ortholog data available?No
Database Contents
Genes2,648
Pathways190
Enzymatic Reactions873
Transport Reactions75
Polypeptides2,528
Protein Complexes40
Enzymes527
Transporters297
Compounds678
Transcription Units1,910
tRNAs51
Protein Features3,107
Database Version29.0
Sequence SourceGCF_016127855.1
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Terrabacteria group
Actinomycetota
Actinomycetes
Actinomycetales
Actinomycetaceae
Actinomyces
Actinomyces naeslundii
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN16357206
NCBI BioProjectPRJNA224116
NCBI-Taxonomy1655
EnvironmentATCC Isolate
Geographic LocationUSA
Annotation ProviderNCBI RefSeq
Annotation Date2020-12-21
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version5.0
Annotation CommentBest-placed reference protein set; GeneMarkS-2+
NCBI Genome Typerepresentative


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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.