Database Authors
Pallavi Subhraveti1, Peter Midford, Ingrid Keseler1, Anamika Kothari1, Ron Caspi1, Peter D Karp1
1SRI International
Summary This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii AB_2008-23-01-01-7, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_AMHQ0100011626525906271,457RefSeq:NZ_AMHQ01000116
NZ_AMHQ0100007622521933252,153RefSeq:NZ_AMHQ01000076
NZ_AMHQ0100002821820756238,655RefSeq:NZ_AMHQ01000028
NZ_AMHQ0100006821120515208,761RefSeq:NZ_AMHQ01000068
NZ_AMHQ0100003214013316157,098RefSeq:NZ_AMHQ01000032
NZ_AMHQ0100004112812611137,958RefSeq:NZ_AMHQ01000041
NZ_AMHQ0100010013112461127,865RefSeq:NZ_AMHQ01000100
NZ_AMHQ0100008913413022127,569RefSeq:NZ_AMHQ01000089
NZ_AMHQ0100003911410932123,107RefSeq:NZ_AMHQ01000039
NZ_AMHQ0100003410510401109,274RefSeq:NZ_AMHQ01000034
NZ_AMHQ01000050979340100,202RefSeq:NZ_AMHQ01000050
NZ_AMHQ0100007984830189,701RefSeq:NZ_AMHQ01000079
NZ_AMHQ0100006182770584,761RefSeq:NZ_AMHQ01000061
NZ_AMHQ0100001385775382,663RefSeq:NZ_AMHQ01000013
NZ_AMHQ0100009781792078,249RefSeq:NZ_AMHQ01000097
NZ_AMHQ0100000171654274,501RefSeq:NZ_AMHQ01000001
NZ_AMHQ0100000377732270,904RefSeq:NZ_AMHQ01000003
NZ_AMHQ0100005174730164,628RefSeq:NZ_AMHQ01000051
NZ_AMHQ0100011073693163,355RefSeq:NZ_AMHQ01000110
NZ_AMHQ0100006559570262,055RefSeq:NZ_AMHQ01000065
NZ_AMHQ0100000957531360,645RefSeq:NZ_AMHQ01000009
NZ_AMHQ0100004855530256,261RefSeq:NZ_AMHQ01000048
NZ_AMHQ0100004555510454,481RefSeq:NZ_AMHQ01000045
NZ_AMHQ0100008557542154,344RefSeq:NZ_AMHQ01000085
NZ_AMHQ0100001059580153,179RefSeq:NZ_AMHQ01000010
NZ_AMHQ0100006949460350,372RefSeq:NZ_AMHQ01000069
NZ_AMHQ0100004751500147,108RefSeq:NZ_AMHQ01000047
NZ_AMHQ0100003840360446,180RefSeq:NZ_AMHQ01000038
NZ_AMHQ0100006037340345,866RefSeq:NZ_AMHQ01000060
NZ_AMHQ0100007144390545,691RefSeq:NZ_AMHQ01000071
NZ_AMHQ0100008443421044,864RefSeq:NZ_AMHQ01000084
NZ_AMHQ0100005643400342,702RefSeq:NZ_AMHQ01000056
NZ_AMHQ0100011340380242,614RefSeq:NZ_AMHQ01000113
NZ_AMHQ0100005838352142,445RefSeq:NZ_AMHQ01000058
NZ_AMHQ0100004437340340,989RefSeq:NZ_AMHQ01000044
NZ_AMHQ0100002234310338,825RefSeq:NZ_AMHQ01000022
NZ_AMHQ0100010530300036,613RefSeq:NZ_AMHQ01000105
NZ_AMHQ0100003738380036,356RefSeq:NZ_AMHQ01000037
NZ_AMHQ0100005350480232,633RefSeq:NZ_AMHQ01000053
NZ_AMHQ0100005431300130,220RefSeq:NZ_AMHQ01000054
NZ_AMHQ0100004925250029,727RefSeq:NZ_AMHQ01000049
NZ_AMHQ0100007423203028,142RefSeq:NZ_AMHQ01000074
NZ_AMHQ0100006628260227,903RefSeq:NZ_AMHQ01000066
NZ_AMHQ0100002027240327,036RefSeq:NZ_AMHQ01000020
NZ_AMHQ0100000527243026,081RefSeq:NZ_AMHQ01000005
NZ_AMHQ0100006418180025,568RefSeq:NZ_AMHQ01000064
NZ_AMHQ0100007529280125,461RefSeq:NZ_AMHQ01000075
NZ_AMHQ0100008725250024,964RefSeq:NZ_AMHQ01000087
NZ_AMHQ0100009420190123,962RefSeq:NZ_AMHQ01000094
NZ_AMHQ0100009125231123,779RefSeq:NZ_AMHQ01000091
NZ_AMHQ0100005716160020,754RefSeq:NZ_AMHQ01000057
NZ_AMHQ0100011219180120,682RefSeq:NZ_AMHQ01000112
NZ_AMHQ0100006214140018,011RefSeq:NZ_AMHQ01000062
NZ_AMHQ010000831291217,845RefSeq:NZ_AMHQ01000083
NZ_AMHQ0100007024230117,394RefSeq:NZ_AMHQ01000070
NZ_AMHQ0100006330300017,195RefSeq:NZ_AMHQ01000063
NZ_AMHQ0100008019170217,137RefSeq:NZ_AMHQ01000080
NZ_AMHQ0100002515140112,602RefSeq:NZ_AMHQ01000025
NZ_AMHQ0100005213120112,172RefSeq:NZ_AMHQ01000052
NZ_AMHQ0100006718180010,923RefSeq:NZ_AMHQ01000067
56 Undisplayed Contigs/Replicons143138522177,523
Total:3,9343,743611304,032,165
Ortholog data available?Yes
Database Contents
Genes3,934
Pathways267
Enzymatic Reactions1,313
Transport Reactions102
Polypeptides3,772
Protein Complexes55
Enzymes775
Transporters352
Compounds1,069
Transcription Units2,728
tRNAs54
GO Terms1,342
Database Version29.0
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Gammaproteobacteria
Moraxellales
Moraxellaceae
Acinetobacter
Acinetobacter calcoaceticus/baumannii complex
Acinetobacter baumannii
Acinetobacter baumannii AB_2008-23-01-01-7
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN02471226
NCBI BioProjectPRJNA224116
NCBI-Taxonomy1221261
Environmenthospital surface
Annotation ProviderNCBI
Annotation Date2017-11-23
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version4.3
Annotation CommentBest-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

Report Errors or Provide Feedback
Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.