Summary of Acinetobacter baumannii AB_2009-04-01-7, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii AB_2009-04-01-7, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AMHS01000055	322	314	5	3	347,776	RefSeq:NZ_AMHS01000055
NZ_AMHS01000041	269	261	0	8	276,562	RefSeq:NZ_AMHS01000041
NZ_AMHS01000027	228	215	5	8	229,271	RefSeq:NZ_AMHS01000027
NZ_AMHS01000065	196	191	2	3	214,591	RefSeq:NZ_AMHS01000065
NZ_AMHS01000026	191	184	1	6	184,454	RefSeq:NZ_AMHS01000026
NZ_AMHS01000057	156	148	7	1	169,588	RefSeq:NZ_AMHS01000057
NZ_AMHS01000014	152	147	2	3	158,557	RefSeq:NZ_AMHS01000014
NZ_AMHS01000039	128	126	1	1	137,958	RefSeq:NZ_AMHS01000039
NZ_AMHS01000068	113	106	2	5	110,436	RefSeq:NZ_AMHS01000068
NZ_AMHS01000013	96	89	3	4	103,749	RefSeq:NZ_AMHS01000013
NZ_AMHS01000020	97	92	4	1	100,370	RefSeq:NZ_AMHS01000020
NZ_AMHS01000044	84	82	0	2	94,086	RefSeq:NZ_AMHS01000044
NZ_AMHS01000086	84	82	0	2	88,802	RefSeq:NZ_AMHS01000086
NZ_AMHS01000018	77	77	0	0	82,741	RefSeq:NZ_AMHS01000018
NZ_AMHS01000038	90	86	3	1	76,952	RefSeq:NZ_AMHS01000038
NZ_AMHS01000074	67	66	0	1	71,858	RefSeq:NZ_AMHS01000074
NZ_AMHS01000035	77	76	0	1	70,060	RefSeq:NZ_AMHS01000035
NZ_AMHS01000023	58	56	1	1	68,101	RefSeq:NZ_AMHS01000023
NZ_AMHS01000081	62	54	4	4	63,213	RefSeq:NZ_AMHS01000081
NZ_AMHS01000032	63	59	0	4	62,774	RefSeq:NZ_AMHS01000032
NZ_AMHS01000056	58	56	0	2	58,832	RefSeq:NZ_AMHS01000056
NZ_AMHS01000031	55	51	0	4	57,763	RefSeq:NZ_AMHS01000031
NZ_AMHS01000012	55	50	1	4	57,543	RefSeq:NZ_AMHS01000012
NZ_AMHS01000010	49	48	0	1	57,013	RefSeq:NZ_AMHS01000010
NZ_AMHS01000047	39	34	3	2	51,801	RefSeq:NZ_AMHS01000047
NZ_AMHS01000073	42	42	0	0	44,322	RefSeq:NZ_AMHS01000073
NZ_AMHS01000046	34	32	0	2	42,929	RefSeq:NZ_AMHS01000046
NZ_AMHS01000043	41	39	0	2	42,319	RefSeq:NZ_AMHS01000043
NZ_AMHS01000077	39	37	0	2	40,834	RefSeq:NZ_AMHS01000077
NZ_AMHS01000052	41	36	5	0	39,571	RefSeq:NZ_AMHS01000052
NZ_AMHS01000059	38	35	0	3	38,721	RefSeq:NZ_AMHS01000059
NZ_AMHS01000030	36	32	0	4	35,360	RefSeq:NZ_AMHS01000030
NZ_AMHS01000021	32	31	1	0	35,263	RefSeq:NZ_AMHS01000021
NZ_AMHS01000015	28	26	0	2	32,674	RefSeq:NZ_AMHS01000015
NZ_AMHS01000037	26	22	2	2	32,604	RefSeq:NZ_AMHS01000037
NZ_AMHS01000001	44	42	0	2	30,247	RefSeq:NZ_AMHS01000001
NZ_AMHS01000019	31	30	0	1	30,223	RefSeq:NZ_AMHS01000019
NZ_AMHS01000040	27	27	0	0	29,478	RefSeq:NZ_AMHS01000040
NZ_AMHS01000025	38	37	0	1	28,372	RefSeq:NZ_AMHS01000025
NZ_AMHS01000029	26	24	0	2	27,712	RefSeq:NZ_AMHS01000029
NZ_AMHS01000033	25	24	0	1	27,091	RefSeq:NZ_AMHS01000033
NZ_AMHS01000024	24	21	1	2	26,479	RefSeq:NZ_AMHS01000024
NZ_AMHS01000042	28	28	0	0	26,407	RefSeq:NZ_AMHS01000042
NZ_AMHS01000048	24	24	0	0	26,208	RefSeq:NZ_AMHS01000048
NZ_AMHS01000049	25	22	0	3	23,999	RefSeq:NZ_AMHS01000049
NZ_AMHS01000045	20	19	0	1	23,764	RefSeq:NZ_AMHS01000045
NZ_AMHS01000053	22	19	1	2	19,311	RefSeq:NZ_AMHS01000053
NZ_AMHS01000028	33	32	0	1	17,868	RefSeq:NZ_AMHS01000028
38 Undisplayed Contigs/Replicons	93	87	6	20	122,663

Total:	3,703	3,518	60	125	3,839,270

Ortholog data available?	Yes

Database Contents

Genes	3,703
Pathways	262
Enzymatic Reactions	1,288
Transport Reactions	94
Polypeptides	3,533
Protein Complexes	54
Enzymes	758
Transporters	338
Compounds	1,047
Transcription Units	2,582
tRNAs	53
GO Terms	1,271

Database Version

29.0

Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus/baumannii complex Acinetobacter baumannii Acinetobacter baumannii AB_2009-04-01-7
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02471279
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	1221263
Environment	wound
Host	Homo sapiens
Annotation Provider	NCBI
Annotation Date	2017-11-23
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	4.3
Annotation Comment	Best-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

Report Errors or Provide Feedback
Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

References

General Information

Data and Services

Credits

Follow Us

Select One or More Databases:

Current Selection

Search

Genome

SmartTables

Metabolism

Analysis

References