Database Authors
Pallavi Subhraveti1, Peter Midford1, Anamika Kothari1, Ron Caspi1, Peter D Karp1
1SRI International
Summary This Pathway/Genome Database (PGDB) was generated on 8-Mar-2022 from the annotated genome of Acinetobacter kookii ANC 4667, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 26.0) [Karp16, Karp11] using MetaCyc version 26.0 [Caspi20]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutes of Health.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_FMYO010000019218901813959,112RefSeq:NZ_FMYO01000001
NZ_FMYO0100000231029893331,118RefSeq:NZ_FMYO01000002
NZ_FMYO0100000327226732288,148RefSeq:NZ_FMYO01000003
NZ_FMYO0100000421620916226,451RefSeq:NZ_FMYO01000004
NZ_FMYO0100000517116281191,767RefSeq:NZ_FMYO01000005
NZ_FMYO01000006156142131161,629RefSeq:NZ_FMYO01000006
NZ_FMYO0100000714914333153,812RefSeq:NZ_FMYO01000007
NZ_FMYO0100000813212732141,829RefSeq:NZ_FMYO01000008
NZ_FMYO0100000911010613119,615RefSeq:NZ_FMYO01000009
NZ_FMYO0100001091901088,819RefSeq:NZ_FMYO01000010
NZ_FMYO0100001174722082,910RefSeq:NZ_FMYO01000011
NZ_FMYO0100001276751078,347RefSeq:NZ_FMYO01000012
NZ_FMYO0100001380754168,637RefSeq:NZ_FMYO01000013
NZ_FMYO0100001447470056,411RefSeq:NZ_FMYO01000014
NZ_FMYO0100001547470049,319RefSeq:NZ_FMYO01000015
NZ_FMYO0100001643376038,520RefSeq:NZ_FMYO01000016
NZ_FMYO0100001719154018,352RefSeq:NZ_FMYO01000017
NZ_FMYO0100001820190118,118RefSeq:NZ_FMYO01000018
NZ_FMYO0100001950505,765RefSeq:NZ_FMYO01000019
NZ_FMYO0100002041034,399RefSeq:NZ_FMYO01000020
NZ_FMYO0100002100001,162RefSeq:NZ_FMYO01000021
NZ_FMYO0100002200001,161RefSeq:NZ_FMYO01000022
Total:2,9432,82282393,085,401
Ortholog data available?Yes
Database Contents
Genes2,937
Pathways260
Enzymatic Reactions1,306
Transport Reactions53
Polypeptides2,828
Protein Complexes5
Enzymes746
Transporters284
Compounds962
Transcription Units2,066
tRNAs69
Protein Features3,503
GO Terms204
Database Version29.0
Sequence SourceGCF_900096895.1
Synonyms Acinetobacter sp. 11-0202
Acinetobacter sp. 11-0607
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Gammaproteobacteria
Moraxellales
Moraxellaceae
Acinetobacter
Acinetobacter kookii
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN05421732
NCBI BioProjectPRJNA224116
NCBI-Taxonomy1226327
Annotation ProviderNCBI RefSeq
Annotation Date2021-11-7
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version5.3
Annotation CommentBest-placed reference protein set; GeneMarkS-2+
NCBI Genome Typerepresentative

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

Report Errors or Provide Feedback
Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.