Summary of Candida albicans SC5314, version 29.0

Tier NIL Organism Database

Database Authors

Candida Genome Database, Department of Genetics, Stanford University School of Medicine

Summary

This Pathway/Genome Database (PGDB) for Candida albicans SC5314 was created from the annotated genome by the Candida Genome Database team at the Stanford University School of Medicine.

The PGDB was generated by the PathoLogic component of the Pathway Tools software [Karp11, Karp19] using the MetaCyc reference database [Caspi20]. The PGDB, which integrates the biochemical reaction network and metabolic pathways of the organism with its genome, was improved by limited manual curation.

Citations: [Arnaud05, Costanzo06, Arnaud07]

Genome

Replicon	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)
Chromosome 1	1,350	1,350	0	0	3,190,597
Chromosome R	976	976	0	0	2,294,278
Chromosome 2	991	991	0	0	2,233,510
Chromosome 3	747	747	0	0	1,798,341
Chromosome 4	663	663	0	0	1,622,837
Chromosome 5	507	507	0	0	1,191,531
Chromosome 6	433	433	0	0	1,030,363
Chromosome 7	405	405	0	0	943,479
Mitochondrion	13	13	0	0	40,420

Total:	6,085	6,085	0	0	14,345,356

Genes without a physical map position:	2

Ortholog data available?	Yes

Database Contents

Genes	6,093
Pathways	162
Enzymatic Reactions	1,409
Transport Reactions	8
Polypeptides	6,141
Protein Complexes	13
Enzymes	1,019
Transporters	301
Compounds	959
tRNAs	0
Protein Features	7,664

Database Version

29.0

Taxonomic Lineage	cellular organisms Eukaryota Opisthokonta Fungi Dikarya Ascomycota saccharomyceta Saccharomycotina Pichiomycetes Serinales Debaryomycetaceae Candida/Lodderomyces clade Candida Candida albicans Candida albicans SC5314
Genetic Code Number	12 -- Alternative Yeast Nuclear
GOLD	0076206
NCBI-Taxonomy	237561

copyright © 2004-2010 The Board of Trustees, Leland Stanford Junior University. Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied. The Candida Genome Database (CGD™) project is funded by the National Institute of Dental and Craniofacial Research at the US National Institutes of Health. The CGD™ is in the Department of Genetics at the School of Medicine, Stanford University. The trademark on CGD™ is held by The Board of Trustees, Leland Stanford Junior University.