Summary of Acinetobacter baumannii TG19582, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii TG19582, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AMIV01000351	111	102	5	4	109,334	RefSeq:NZ_AMIV01000351
NZ_AMIV01000339	76	73	0	3	83,874	RefSeq:NZ_AMIV01000339
NZ_AMIV01000330	55	53	0	2	56,664	RefSeq:NZ_AMIV01000330
NZ_AMIV01000318	50	49	0	1	55,994	RefSeq:NZ_AMIV01000318
NZ_AMIV01000072	70	68	0	2	51,971	RefSeq:NZ_AMIV01000072
NZ_AMIV01000222	50	49	0	1	49,772	RefSeq:NZ_AMIV01000222
NZ_AMIV01000342	48	48	0	0	49,387	RefSeq:NZ_AMIV01000342
NZ_AMIV01000228	45	42	0	3	48,359	RefSeq:NZ_AMIV01000228
NZ_AMIV01000194	53	48	4	1	46,850	RefSeq:NZ_AMIV01000194
NZ_AMIV01000340	48	47	0	1	46,642	RefSeq:NZ_AMIV01000340
NZ_AMIV01000185	48	47	0	1	46,324	RefSeq:NZ_AMIV01000185
NZ_AMIV01000022	41	40	0	1	45,777	RefSeq:NZ_AMIV01000022
NZ_AMIV01000296	43	37	0	6	45,462	RefSeq:NZ_AMIV01000296
NZ_AMIV01000328	36	34	0	2	43,578	RefSeq:NZ_AMIV01000328
NZ_AMIV01000193	35	35	0	0	43,411	RefSeq:NZ_AMIV01000193
NZ_AMIV01000009	41	39	0	2	42,084	RefSeq:NZ_AMIV01000009
NZ_AMIV01000082	38	34	1	3	40,257	RefSeq:NZ_AMIV01000082
NZ_AMIV01000012	40	36	4	0	40,079	RefSeq:NZ_AMIV01000012
NZ_AMIV01000003	36	31	1	4	39,012	RefSeq:NZ_AMIV01000003
NZ_AMIV01000217	41	37	2	2	38,241	RefSeq:NZ_AMIV01000217
NZ_AMIV01000251	34	32	1	1	38,010	RefSeq:NZ_AMIV01000251
NZ_AMIV01000168	27	27	0	0	36,380	RefSeq:NZ_AMIV01000168
NZ_AMIV01000317	27	25	1	1	36,190	RefSeq:NZ_AMIV01000317
NZ_AMIV01000045	38	33	4	1	36,168	RefSeq:NZ_AMIV01000045
NZ_AMIV01000293	29	24	3	2	35,150	RefSeq:NZ_AMIV01000293
NZ_AMIV01000359	32	32	0	0	33,244	RefSeq:NZ_AMIV01000359
NZ_AMIV01000104	29	26	0	3	30,155	RefSeq:NZ_AMIV01000104
NZ_AMIV01000044	26	24	0	2	29,487	RefSeq:NZ_AMIV01000044
NZ_AMIV01000005	26	26	0	0	27,700	RefSeq:NZ_AMIV01000005
NZ_AMIV01000140	22	20	0	2	26,929	RefSeq:NZ_AMIV01000140
NZ_AMIV01000234	25	22	0	3	25,359	RefSeq:NZ_AMIV01000234
NZ_AMIV01000056	21	19	0	2	25,151	RefSeq:NZ_AMIV01000056
NZ_AMIV01000245	24	22	0	2	24,852	RefSeq:NZ_AMIV01000245
NZ_AMIV01000335	38	36	0	2	24,687	RefSeq:NZ_AMIV01000335
NZ_AMIV01000247	18	15	1	2	24,488	RefSeq:NZ_AMIV01000247
NZ_AMIV01000180	20	19	0	1	24,026	RefSeq:NZ_AMIV01000180
NZ_AMIV01000048	19	18	0	1	22,992	RefSeq:NZ_AMIV01000048
NZ_AMIV01000243	29	29	0	0	22,849	RefSeq:NZ_AMIV01000243
NZ_AMIV01000311	19	18	0	1	22,340	RefSeq:NZ_AMIV01000311
NZ_AMIV01000361	17	15	0	2	22,302	RefSeq:NZ_AMIV01000361
NZ_AMIV01000322	17	15	0	2	22,195	RefSeq:NZ_AMIV01000322
NZ_AMIV01000353	17	16	0	1	22,110	RefSeq:NZ_AMIV01000353
NZ_AMIV01000097	19	18	0	1	22,021	RefSeq:NZ_AMIV01000097
NZ_AMIV01000023	24	21	1	2	21,779	RefSeq:NZ_AMIV01000023
NZ_AMIV01000018	18	18	0	0	21,751	RefSeq:NZ_AMIV01000018
NZ_AMIV01000362	36	34	0	2	21,579	RefSeq:NZ_AMIV01000362
NZ_AMIV01000290	22	20	0	2	21,320	RefSeq:NZ_AMIV01000290
NZ_AMIV01000331	19	16	1	2	21,283	RefSeq:NZ_AMIV01000331
NZ_AMIV01000001	19	18	0	1	20,837	RefSeq:NZ_AMIV01000001
NZ_AMIV01000332	22	21	0	1	20,795	RefSeq:NZ_AMIV01000332
NZ_AMIV01000077	18	18	0	0	20,777	RefSeq:NZ_AMIV01000077
NZ_AMIV01000103	20	18	0	2	20,775	RefSeq:NZ_AMIV01000103
NZ_AMIV01000090	18	17	0	1	20,598	RefSeq:NZ_AMIV01000090
NZ_AMIV01000087	20	18	0	2	20,566	RefSeq:NZ_AMIV01000087
NZ_AMIV01000013	18	17	1	0	20,533	RefSeq:NZ_AMIV01000013
NZ_AMIV01000246	22	21	0	1	20,502	RefSeq:NZ_AMIV01000246
NZ_AMIV01000035	20	19	0	1	19,463	RefSeq:NZ_AMIV01000035
NZ_AMIV01000047	15	15	0	0	19,414	RefSeq:NZ_AMIV01000047
NZ_AMIV01000345	20	16	3	1	18,978	RefSeq:NZ_AMIV01000345
NZ_AMIV01000085	22	20	0	2	18,862	RefSeq:NZ_AMIV01000085
NZ_AMIV01000277	17	15	0	2	18,348	RefSeq:NZ_AMIV01000277
NZ_AMIV01000030	21	19	1	1	18,167	RefSeq:NZ_AMIV01000030
NZ_AMIV01000057	13	12	0	1	18,146	RefSeq:NZ_AMIV01000057
NZ_AMIV01000259	13	10	2	1	18,083	RefSeq:NZ_AMIV01000259
NZ_AMIV01000074	18	17	0	1	17,855	RefSeq:NZ_AMIV01000074
NZ_AMIV01000083	17	16	0	1	17,800	RefSeq:NZ_AMIV01000083
NZ_AMIV01000304	15	14	0	1	17,495	RefSeq:NZ_AMIV01000304
NZ_AMIV01000355	18	16	0	2	17,272	RefSeq:NZ_AMIV01000355
NZ_AMIV01000080	12	10	0	2	16,544	RefSeq:NZ_AMIV01000080
NZ_AMIV01000052	16	16	0	0	16,520	RefSeq:NZ_AMIV01000052
NZ_AMIV01000121	14	14	0	0	16,463	RefSeq:NZ_AMIV01000121
NZ_AMIV01000102	12	9	1	2	16,432	RefSeq:NZ_AMIV01000102
NZ_AMIV01000366	17	16	0	1	16,395	RefSeq:NZ_AMIV01000366
NZ_AMIV01000176	18	15	0	3	16,373	RefSeq:NZ_AMIV01000176
NZ_AMIV01000354	14	13	0	1	16,152	RefSeq:NZ_AMIV01000354
NZ_AMIV01000053	16	15	0	1	16,092	RefSeq:NZ_AMIV01000053
NZ_AMIV01000011	14	14	0	0	15,737	RefSeq:NZ_AMIV01000011
NZ_AMIV01000334	17	15	0	2	15,648	RefSeq:NZ_AMIV01000334
NZ_AMIV01000106	30	29	0	1	15,418	RefSeq:NZ_AMIV01000106
NZ_AMIV01000021	17	15	2	0	15,399	RefSeq:NZ_AMIV01000021
NZ_AMIV01000043	26	26	0	0	15,256	RefSeq:NZ_AMIV01000043
NZ_AMIV01000073	15	14	0	1	15,244	RefSeq:NZ_AMIV01000073
NZ_AMIV01000089	15	13	0	2	15,144	RefSeq:NZ_AMIV01000089
NZ_AMIV01000343	13	13	0	0	14,942	RefSeq:NZ_AMIV01000343
NZ_AMIV01000032	13	12	0	1	14,445	RefSeq:NZ_AMIV01000032
NZ_AMIV01000358	16	15	0	1	14,420	RefSeq:NZ_AMIV01000358
NZ_AMIV01000333	17	17	0	0	14,368	RefSeq:NZ_AMIV01000333
NZ_AMIV01000014	15	14	0	1	14,338	RefSeq:NZ_AMIV01000014
NZ_AMIV01000016	12	11	0	1	14,171	RefSeq:NZ_AMIV01000016
NZ_AMIV01000071	20	19	0	1	13,900	RefSeq:NZ_AMIV01000071
NZ_AMIV01000286	11	10	0	1	13,637	RefSeq:NZ_AMIV01000286
NZ_AMIV01000027	12	12	0	0	13,597	RefSeq:NZ_AMIV01000027
NZ_AMIV01000015	14	13	0	1	13,461	RefSeq:NZ_AMIV01000015
NZ_AMIV01000356	12	10	0	2	13,307	RefSeq:NZ_AMIV01000356
NZ_AMIV01000262	13	11	0	2	13,283	RefSeq:NZ_AMIV01000262
NZ_AMIV01000081	14	14	0	0	13,213	RefSeq:NZ_AMIV01000081
NZ_AMIV01000031	10	10	0	0	13,170	RefSeq:NZ_AMIV01000031
NZ_AMIV01000006	12	12	0	0	13,082	RefSeq:NZ_AMIV01000006
NZ_AMIV01000344	14	13	0	1	13,053	RefSeq:NZ_AMIV01000344
NZ_AMIV01000132	11	11	0	0	12,913	RefSeq:NZ_AMIV01000132
NZ_AMIV01000281	14	14	0	0	12,865	RefSeq:NZ_AMIV01000281
NZ_AMIV01000329	12	11	0	1	12,803	RefSeq:NZ_AMIV01000329
NZ_AMIV01000088	13	12	0	1	12,719	RefSeq:NZ_AMIV01000088
NZ_AMIV01000109	12	12	0	0	12,337	RefSeq:NZ_AMIV01000109
NZ_AMIV01000300	13	11	0	2	12,002	RefSeq:NZ_AMIV01000300
NZ_AMIV01000150	16	15	0	1	11,985	RefSeq:NZ_AMIV01000150
NZ_AMIV01000292	17	14	1	2	11,115	RefSeq:NZ_AMIV01000292
NZ_AMIV01000320	14	10	4	0	10,952	RefSeq:NZ_AMIV01000320
NZ_AMIV01000115	11	10	0	1	10,132	RefSeq:NZ_AMIV01000115
NZ_AMIV01000202	12	9	1	2	9,680	RefSeq:NZ_AMIV01000202
NZ_AMIV01000017	15	12	0	3	9,592	RefSeq:NZ_AMIV01000017
NZ_AMIV01000008	11	10	1	0	9,257	RefSeq:NZ_AMIV01000008
NZ_AMIV01000349	12	11	0	1	9,055	RefSeq:NZ_AMIV01000349
NZ_AMIV01000058	12	10	0	2	8,631	RefSeq:NZ_AMIV01000058
NZ_AMIV01000163	15	14	0	1	8,250	RefSeq:NZ_AMIV01000163
NZ_AMIV01000309	12	11	1	0	7,354	RefSeq:NZ_AMIV01000309
250 Undisplayed Contigs/Replicons	771	757	29	219	1,006,012

Total:	3,761	3,320	76	365	3,797,693

Ortholog data available?	Yes

Database Contents

Genes	3,746
Pathways	255
Enzymatic Reactions	1,235
Transport Reactions	107
Polypeptides	3,476
Protein Complexes	49
Enzymes	746
Transporters	329
Compounds	1,015
Transcription Units	2,770
tRNAs	57
GO Terms	2,041

Database Version

29.0

Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus/baumannii complex Acinetobacter baumannii Acinetobacter baumannii TG19582
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02471241
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	1221292
Annotation Provider	NCBI
Annotation Date	2017-11-23
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	4.3
Annotation Comment	Best-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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