Summary of Acinetobacter baumannii Naval-82, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii Naval-82, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AMSW01000139	234	220	13	1	226,337	RefSeq:NZ_AMSW01000139
NZ_AMSW01000145	156	150	2	4	165,025	RefSeq:NZ_AMSW01000145
NZ_AMSW01000078	137	126	6	5	146,070	RefSeq:NZ_AMSW01000078
NZ_AMSW01000024	99	90	5	4	93,128	RefSeq:NZ_AMSW01000024
NZ_AMSW01000030	81	75	2	4	86,892	RefSeq:NZ_AMSW01000030
NZ_AMSW01000004	79	75	0	4	83,923	RefSeq:NZ_AMSW01000004
NZ_AMSW01000133	87	81	1	5	81,994	RefSeq:NZ_AMSW01000133
NZ_AMSW01000168	72	65	3	4	80,184	RefSeq:NZ_AMSW01000168
NZ_AMSW01000160	79	73	1	5	79,426	RefSeq:NZ_AMSW01000160
NZ_AMSW01000097	75	71	0	4	79,304	RefSeq:NZ_AMSW01000097
NZ_AMSW01000149	78	72	3	3	78,504	RefSeq:NZ_AMSW01000149
NZ_AMSW01000061	70	65	2	3	74,728	RefSeq:NZ_AMSW01000061
NZ_AMSW01000178	62	58	0	4	70,134	RefSeq:NZ_AMSW01000178
NZ_AMSW01000159	49	45	0	4	64,838	RefSeq:NZ_AMSW01000159
NZ_AMSW01000163	55	52	0	3	64,516	RefSeq:NZ_AMSW01000163
NZ_AMSW01000062	53	50	0	3	62,427	RefSeq:NZ_AMSW01000062
NZ_AMSW01000105	76	61	5	10	62,390	RefSeq:NZ_AMSW01000105
NZ_AMSW01000148	52	48	0	4	56,369	RefSeq:NZ_AMSW01000148
NZ_AMSW01000173	45	44	0	1	56,203	RefSeq:NZ_AMSW01000173
NZ_AMSW01000090	55	46	6	3	55,245	RefSeq:NZ_AMSW01000090
NZ_AMSW01000029	51	46	3	2	53,991	RefSeq:NZ_AMSW01000029
NZ_AMSW01000009	47	45	0	2	52,036	RefSeq:NZ_AMSW01000009
NZ_AMSW01000054	54	49	4	1	51,691	RefSeq:NZ_AMSW01000054
NZ_AMSW01000055	60	50	7	3	50,853	RefSeq:NZ_AMSW01000055
NZ_AMSW01000053	51	44	4	3	49,412	RefSeq:NZ_AMSW01000053
NZ_AMSW01000012	47	43	3	1	47,289	RefSeq:NZ_AMSW01000012
NZ_AMSW01000195	43	41	0	2	45,107	RefSeq:NZ_AMSW01000195
NZ_AMSW01000107	47	43	1	3	43,699	RefSeq:NZ_AMSW01000107
NZ_AMSW01000123	41	40	1	0	42,993	RefSeq:NZ_AMSW01000123
NZ_AMSW01000068	47	39	4	4	40,436	RefSeq:NZ_AMSW01000068
NZ_AMSW01000121	45	43	0	2	38,875	RefSeq:NZ_AMSW01000121
NZ_AMSW01000051	36	34	0	2	38,448	RefSeq:NZ_AMSW01000051
NZ_AMSW01000155	41	38	0	3	38,347	RefSeq:NZ_AMSW01000155
NZ_AMSW01000101	29	25	0	4	37,360	RefSeq:NZ_AMSW01000101
NZ_AMSW01000007	40	36	0	4	36,445	RefSeq:NZ_AMSW01000007
NZ_AMSW01000189	44	37	1	6	34,586	RefSeq:NZ_AMSW01000189
NZ_AMSW01000190	34	27	0	7	34,569	RefSeq:NZ_AMSW01000190
NZ_AMSW01000140	35	30	0	5	34,546	RefSeq:NZ_AMSW01000140
NZ_AMSW01000074	33	31	0	2	34,042	RefSeq:NZ_AMSW01000074
NZ_AMSW01000147	31	28	0	3	33,849	RefSeq:NZ_AMSW01000147
NZ_AMSW01000181	31	29	0	2	33,084	RefSeq:NZ_AMSW01000181
NZ_AMSW01000098	35	30	1	4	32,515	RefSeq:NZ_AMSW01000098
NZ_AMSW01000080	33	30	0	3	30,930	RefSeq:NZ_AMSW01000080
NZ_AMSW01000013	34	32	0	2	30,207	RefSeq:NZ_AMSW01000013
NZ_AMSW01000015	28	28	0	0	30,078	RefSeq:NZ_AMSW01000015
NZ_AMSW01000026	32	27	4	1	29,123	RefSeq:NZ_AMSW01000026
NZ_AMSW01000158	24	20	2	2	28,750	RefSeq:NZ_AMSW01000158
NZ_AMSW01000132	29	25	0	4	28,540	RefSeq:NZ_AMSW01000132
NZ_AMSW01000162	26	24	1	1	28,191	RefSeq:NZ_AMSW01000162
NZ_AMSW01000020	29	25	0	4	28,181	RefSeq:NZ_AMSW01000020
NZ_AMSW01000018	24	22	0	2	28,133	RefSeq:NZ_AMSW01000018
NZ_AMSW01000109	26	21	0	5	27,297	RefSeq:NZ_AMSW01000109
NZ_AMSW01000087	26	23	0	3	27,021	RefSeq:NZ_AMSW01000087
NZ_AMSW01000103	30	27	1	2	26,127	RefSeq:NZ_AMSW01000103
NZ_AMSW01000039	23	20	1	2	25,356	RefSeq:NZ_AMSW01000039
NZ_AMSW01000127	23	20	1	2	22,501	RefSeq:NZ_AMSW01000127
NZ_AMSW01000019	21	17	0	4	21,437	RefSeq:NZ_AMSW01000019
NZ_AMSW01000002	24	22	0	2	21,425	RefSeq:NZ_AMSW01000002
NZ_AMSW01000126	25	20	0	5	20,251	RefSeq:NZ_AMSW01000126
NZ_AMSW01000114	21	19	0	2	20,242	RefSeq:NZ_AMSW01000114
NZ_AMSW01000143	17	14	0	3	19,772	RefSeq:NZ_AMSW01000143
NZ_AMSW01000034	19	12	0	7	18,158	RefSeq:NZ_AMSW01000034
NZ_AMSW01000175	19	13	0	6	17,507	RefSeq:NZ_AMSW01000175
NZ_AMSW01000108	20	18	0	2	17,263	RefSeq:NZ_AMSW01000108
NZ_AMSW01000152	15	14	0	1	17,145	RefSeq:NZ_AMSW01000152
NZ_AMSW01000023	21	18	0	3	15,974	RefSeq:NZ_AMSW01000023
NZ_AMSW01000003	14	11	0	3	15,230	RefSeq:NZ_AMSW01000003
NZ_AMSW01000167	19	13	0	6	15,218	RefSeq:NZ_AMSW01000167
NZ_AMSW01000046	13	12	0	1	15,043	RefSeq:NZ_AMSW01000046
NZ_AMSW01000184	16	11	0	5	14,947	RefSeq:NZ_AMSW01000184
NZ_AMSW01000141	19	19	0	0	14,462	RefSeq:NZ_AMSW01000141
NZ_AMSW01000089	19	17	1	1	14,387	RefSeq:NZ_AMSW01000089
NZ_AMSW01000157	13	12	0	1	14,108	RefSeq:NZ_AMSW01000157
NZ_AMSW01000044	12	10	0	2	13,722	RefSeq:NZ_AMSW01000044
NZ_AMSW01000191	14	10	0	4	13,251	RefSeq:NZ_AMSW01000191
NZ_AMSW01000104	16	14	0	2	13,143	RefSeq:NZ_AMSW01000104
NZ_AMSW01000041	15	12	0	3	12,550	RefSeq:NZ_AMSW01000041
NZ_AMSW01000153	12	9	0	3	11,206	RefSeq:NZ_AMSW01000153
NZ_AMSW01000038	12	11	0	1	10,860	RefSeq:NZ_AMSW01000038
NZ_AMSW01000021	14	12	0	2	10,845	RefSeq:NZ_AMSW01000021
NZ_AMSW01000031	12	10	0	2	9,647	RefSeq:NZ_AMSW01000031
NZ_AMSW01000048	12	9	0	3	9,155	RefSeq:NZ_AMSW01000048
NZ_AMSW01000182	15	14	0	1	9,122	RefSeq:NZ_AMSW01000182
NZ_AMSW01000128	11	10	0	1	8,502	RefSeq:NZ_AMSW01000128
NZ_AMSW01000010	12	9	0	3	8,426	RefSeq:NZ_AMSW01000010
NZ_AMSW01000171	13	10	1	2	7,487	RefSeq:NZ_AMSW01000171
NZ_AMSW01000077	12	11	0	1	5,755	RefSeq:NZ_AMSW01000077
110 Undisplayed Contigs/Replicons	304	300	4	170	410,444

Total:	3,974	3,452	94	428	3,908,929

Ortholog data available?	Yes

Database Contents

Genes	3,974
Pathways	275
Enzymatic Reactions	1,367
Transport Reactions	106
Polypeptides	3,470
Protein Complexes	50
Enzymes	769
Transporters	340
Compounds	1,055
Transcription Units	2,845
tRNAs	74
GO Terms	14,229

Database Version

29.0

Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus/baumannii complex Acinetobacter baumannii Acinetobacter baumannii Naval-82
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN00761226
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	903921
Environment	blood
Geographic Location	USA
Collection Date	2006-10-21
Host	Homo sapiens
Annotation Provider	NCBI
Annotation Date	2017-11-23
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	4.3
Annotation Comment	Best-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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