Summary of Acinetobacter baumannii AB

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii AB_908-14-7, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AMHX01000032	117	112	3	2	117,400	RefSeq:NZ_AMHX01000032
NZ_AMHX01000026	105	97	5	3	114,041	RefSeq:NZ_AMHX01000026
NZ_AMHX01000291	97	95	0	2	101,235	RefSeq:NZ_AMHX01000291
NZ_AMHX01000042	82	80	0	2	95,450	RefSeq:NZ_AMHX01000042
NZ_AMHX01000010	80	77	1	2	83,569	RefSeq:NZ_AMHX01000010
NZ_AMHX01000119	63	62	0	1	68,302	RefSeq:NZ_AMHX01000119
NZ_AMHX01000125	71	67	1	3	64,493	RefSeq:NZ_AMHX01000125
NZ_AMHX01000002	56	54	0	2	63,948	RefSeq:NZ_AMHX01000002
NZ_AMHX01000235	64	62	0	2	63,011	RefSeq:NZ_AMHX01000235
NZ_AMHX01000146	60	58	2	0	61,002	RefSeq:NZ_AMHX01000146
NZ_AMHX01000172	69	66	1	2	58,339	RefSeq:NZ_AMHX01000172
NZ_AMHX01000246	52	51	0	1	56,563	RefSeq:NZ_AMHX01000246
NZ_AMHX01000262	46	43	0	3	50,254	RefSeq:NZ_AMHX01000262
NZ_AMHX01000204	56	49	5	2	49,281	RefSeq:NZ_AMHX01000204
NZ_AMHX01000115	41	40	0	1	48,085	RefSeq:NZ_AMHX01000115
NZ_AMHX01000038	58	53	4	1	47,475	RefSeq:NZ_AMHX01000038
NZ_AMHX01000266	45	42	0	3	47,118	RefSeq:NZ_AMHX01000266
NZ_AMHX01000290	48	47	0	1	47,088	RefSeq:NZ_AMHX01000290
NZ_AMHX01000024	43	43	0	0	46,692	RefSeq:NZ_AMHX01000024
NZ_AMHX01000201	43	41	0	2	46,566	RefSeq:NZ_AMHX01000201
NZ_AMHX01000233	42	41	0	1	44,473	RefSeq:NZ_AMHX01000233
NZ_AMHX01000122	44	43	0	1	43,329	RefSeq:NZ_AMHX01000122
NZ_AMHX01000274	41	40	0	1	41,710	RefSeq:NZ_AMHX01000274
NZ_AMHX01000264	43	38	4	1	41,129	RefSeq:NZ_AMHX01000264
NZ_AMHX01000270	34	34	0	0	40,287	RefSeq:NZ_AMHX01000270
NZ_AMHX01000167	37	37	0	0	40,169	RefSeq:NZ_AMHX01000167
NZ_AMHX01000210	34	33	0	1	37,470	RefSeq:NZ_AMHX01000210
NZ_AMHX01000277	40	38	0	2	37,328	RefSeq:NZ_AMHX01000277
NZ_AMHX01000258	36	35	0	1	35,444	RefSeq:NZ_AMHX01000258
NZ_AMHX01000013	34	30	2	2	35,170	RefSeq:NZ_AMHX01000013
NZ_AMHX01000275	30	29	0	1	34,088	RefSeq:NZ_AMHX01000275
NZ_AMHX01000229	32	32	0	0	32,605	RefSeq:NZ_AMHX01000229
NZ_AMHX01000252	32	31	0	1	32,370	RefSeq:NZ_AMHX01000252
NZ_AMHX01000045	32	30	1	1	32,212	RefSeq:NZ_AMHX01000045
NZ_AMHX01000256	30	28	0	2	32,179	RefSeq:NZ_AMHX01000256
NZ_AMHX01000018	25	25	0	0	31,632	RefSeq:NZ_AMHX01000018
NZ_AMHX01000286	29	28	0	1	31,621	RefSeq:NZ_AMHX01000286
NZ_AMHX01000129	30	27	3	0	31,466	RefSeq:NZ_AMHX01000129
NZ_AMHX01000182	38	37	0	1	31,103	RefSeq:NZ_AMHX01000182
NZ_AMHX01000280	35	29	5	1	31,000	RefSeq:NZ_AMHX01000280
NZ_AMHX01000003	29	27	0	2	29,758	RefSeq:NZ_AMHX01000003
NZ_AMHX01000035	25	24	0	1	28,531	RefSeq:NZ_AMHX01000035
NZ_AMHX01000028	24	23	0	1	27,648	RefSeq:NZ_AMHX01000028
NZ_AMHX01000156	24	24	0	0	27,151	RefSeq:NZ_AMHX01000156
NZ_AMHX01000218	17	14	1	2	26,878	RefSeq:NZ_AMHX01000218
NZ_AMHX01000205	28	28	0	0	26,626	RefSeq:NZ_AMHX01000205
NZ_AMHX01000019	26	25	0	1	26,165	RefSeq:NZ_AMHX01000019
NZ_AMHX01000287	23	22	1	0	25,932	RefSeq:NZ_AMHX01000287
NZ_AMHX01000029	25	23	1	1	25,892	RefSeq:NZ_AMHX01000029
NZ_AMHX01000063	23	22	0	1	24,793	RefSeq:NZ_AMHX01000063
NZ_AMHX01000008	24	24	0	0	24,056	RefSeq:NZ_AMHX01000008
NZ_AMHX01000265	21	20	0	1	23,630	RefSeq:NZ_AMHX01000265
NZ_AMHX01000048	18	18	0	0	23,568	RefSeq:NZ_AMHX01000048
NZ_AMHX01000272	22	22	0	0	23,419	RefSeq:NZ_AMHX01000272
NZ_AMHX01000077	19	16	1	2	22,716	RefSeq:NZ_AMHX01000077
NZ_AMHX01000053	29	26	1	2	21,557	RefSeq:NZ_AMHX01000053
NZ_AMHX01000241	20	20	0	0	21,358	RefSeq:NZ_AMHX01000241
NZ_AMHX01000021	24	23	0	1	20,864	RefSeq:NZ_AMHX01000021
NZ_AMHX01000106	18	17	0	1	20,854	RefSeq:NZ_AMHX01000106
NZ_AMHX01000071	17	17	0	0	20,549	RefSeq:NZ_AMHX01000071
NZ_AMHX01000249	15	15	0	0	19,395	RefSeq:NZ_AMHX01000249
NZ_AMHX01000238	18	16	0	2	19,288	RefSeq:NZ_AMHX01000238
NZ_AMHX01000139	16	14	0	2	19,158	RefSeq:NZ_AMHX01000139
NZ_AMHX01000001	14	13	0	1	19,002	RefSeq:NZ_AMHX01000001
NZ_AMHX01000081	18	18	0	0	18,839	RefSeq:NZ_AMHX01000081
NZ_AMHX01000253	22	21	0	1	18,778	RefSeq:NZ_AMHX01000253
NZ_AMHX01000090	15	15	0	0	18,684	RefSeq:NZ_AMHX01000090
NZ_AMHX01000082	18	16	1	1	18,444	RefSeq:NZ_AMHX01000082
NZ_AMHX01000033	19	18	0	1	18,314	RefSeq:NZ_AMHX01000033
NZ_AMHX01000247	18	17	0	1	18,092	RefSeq:NZ_AMHX01000247
NZ_AMHX01000245	14	14	0	0	18,016	RefSeq:NZ_AMHX01000245
NZ_AMHX01000007	16	16	0	0	17,787	RefSeq:NZ_AMHX01000007
NZ_AMHX01000271	17	16	0	1	17,660	RefSeq:NZ_AMHX01000271
NZ_AMHX01000096	18	18	0	0	17,612	RefSeq:NZ_AMHX01000096
NZ_AMHX01000228	15	14	0	1	17,321	RefSeq:NZ_AMHX01000228
NZ_AMHX01000136	19	18	0	1	17,161	RefSeq:NZ_AMHX01000136
NZ_AMHX01000220	13	13	0	0	16,939	RefSeq:NZ_AMHX01000220
NZ_AMHX01000268	15	12	0	3	16,632	RefSeq:NZ_AMHX01000268
NZ_AMHX01000161	28	27	0	1	16,614	RefSeq:NZ_AMHX01000161
NZ_AMHX01000022	11	10	0	1	16,559	RefSeq:NZ_AMHX01000022
NZ_AMHX01000085	22	19	1	2	16,547	RefSeq:NZ_AMHX01000085
NZ_AMHX01000257	15	12	2	1	16,420	RefSeq:NZ_AMHX01000257
NZ_AMHX01000006	13	13	0	0	16,188	RefSeq:NZ_AMHX01000006
NZ_AMHX01000089	13	12	0	1	16,083	RefSeq:NZ_AMHX01000089
NZ_AMHX01000056	11	11	0	0	15,962	RefSeq:NZ_AMHX01000056
NZ_AMHX01000250	12	11	0	1	15,723	RefSeq:NZ_AMHX01000250
NZ_AMHX01000059	12	10	2	0	15,445	RefSeq:NZ_AMHX01000059
NZ_AMHX01000284	16	16	0	0	15,357	RefSeq:NZ_AMHX01000284
NZ_AMHX01000005	15	13	0	2	15,112	RefSeq:NZ_AMHX01000005
NZ_AMHX01000043	17	16	0	1	14,354	RefSeq:NZ_AMHX01000043
NZ_AMHX01000109	15	13	0	2	14,303	RefSeq:NZ_AMHX01000109
NZ_AMHX01000206	12	12	0	0	14,061	RefSeq:NZ_AMHX01000206
NZ_AMHX01000237	16	12	0	4	13,458	RefSeq:NZ_AMHX01000237
NZ_AMHX01000078	15	15	0	0	13,344	RefSeq:NZ_AMHX01000078
NZ_AMHX01000199	18	18	0	0	13,104	RefSeq:NZ_AMHX01000199
NZ_AMHX01000276	13	13	0	0	12,911	RefSeq:NZ_AMHX01000276
NZ_AMHX01000231	13	12	0	1	12,667	RefSeq:NZ_AMHX01000231
NZ_AMHX01000094	11	10	0	1	12,535	RefSeq:NZ_AMHX01000094
NZ_AMHX01000037	12	12	0	0	12,273	RefSeq:NZ_AMHX01000037
NZ_AMHX01000259	16	15	0	1	12,003	RefSeq:NZ_AMHX01000259
NZ_AMHX01000102	15	14	0	1	11,737	RefSeq:NZ_AMHX01000102
NZ_AMHX01000267	11	11	0	0	11,533	RefSeq:NZ_AMHX01000267
NZ_AMHX01000040	12	12	0	0	11,181	RefSeq:NZ_AMHX01000040
NZ_AMHX01000261	12	10	0	2	10,409	RefSeq:NZ_AMHX01000261
NZ_AMHX01000014	13	11	0	2	10,215	RefSeq:NZ_AMHX01000014
NZ_AMHX01000282	13	12	0	1	9,044	RefSeq:NZ_AMHX01000282
NZ_AMHX01000049	12	11	0	1	8,216	RefSeq:NZ_AMHX01000049
NZ_AMHX01000070	12	11	1	0	7,230	RefSeq:NZ_AMHX01000070
NZ_AMHX01000069	14	13	0	1	6,006	RefSeq:NZ_AMHX01000069
182 Undisplayed Contigs/Replicons	467	454	13	120	578,307

Total:	3,777	3,484	62	231	3,850,665

Ortholog data available?	Yes

Database Contents

Genes	3,777
Pathways	258
Enzymatic Reactions	1,271
Transport Reactions	110
Polypeptides	3,608
Protein Complexes	52
Enzymes	780
Transporters	349
Compounds	1,040
Transcription Units	2,724
tRNAs	55
GO Terms	2,111

Database Version

29.0

Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus/baumannii complex Acinetobacter baumannii Acinetobacter baumannii AB_908-14-7
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02471280
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	1221268
Environment	bronchoalveolar lavage
Host	Homo sapiens
Annotation Provider	NCBI
Annotation Date	2017-11-23
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	4.3
Annotation Comment	Best-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

Report Errors or Provide Feedback
Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

References

General Information

Data and Services

Credits

Follow Us

Select One or More Databases:

Current Selection

Search

Genome

SmartTables

Metabolism

Analysis

References