Summary of Actinoplanes awajinensis mycoplanecinus NRRL B-16712, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 01-June-2022 from the annotated genome of Actinoplanes awajinensis NRRL B-16712, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 26.0) [Karp16, Karp11] using MetaCyc version 26.0 [Caspi20]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutes of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_LLZH01000013	328	322	0	6	356,312	RefSeq:NZ_LLZH01000013
NZ_LLZH01000318	311	308	1	2	350,120	RefSeq:NZ_LLZH01000318
NZ_LLZH01000085	257	254	3	0	292,792	RefSeq:NZ_LLZH01000085
NZ_LLZH01000001	246	239	4	3	272,562	RefSeq:NZ_LLZH01000001
NZ_LLZH01000097	230	227	0	3	255,796	RefSeq:NZ_LLZH01000097
NZ_LLZH01000121	246	233	6	7	254,640	RefSeq:NZ_LLZH01000121
NZ_LLZH01000294	181	174	0	7	229,556	RefSeq:NZ_LLZH01000294
NZ_LLZH01000234	243	242	0	1	227,334	RefSeq:NZ_LLZH01000234
NZ_LLZH01000281	199	181	14	4	226,037	RefSeq:NZ_LLZH01000281
NZ_LLZH01000167	200	196	1	3	222,029	RefSeq:NZ_LLZH01000167
NZ_LLZH01000025	203	196	4	3	221,546	RefSeq:NZ_LLZH01000025
NZ_LLZH01000306	185	178	4	3	209,843	RefSeq:NZ_LLZH01000306
NZ_LLZH01000331	201	196	0	5	209,812	RefSeq:NZ_LLZH01000331
NZ_LLZH01000342	162	160	0	2	164,879	RefSeq:NZ_LLZH01000342
NZ_LLZH01000178	142	141	1	0	155,360	RefSeq:NZ_LLZH01000178
NZ_LLZH01000002	121	116	0	5	155,186	RefSeq:NZ_LLZH01000002
NZ_LLZH01000268	126	125	0	1	145,320	RefSeq:NZ_LLZH01000268
NZ_LLZH01000037	115	113	0	2	141,686	RefSeq:NZ_LLZH01000037
NZ_LLZH01000048	102	101	0	1	137,614	RefSeq:NZ_LLZH01000048
NZ_LLZH01000059	128	127	1	0	136,006	RefSeq:NZ_LLZH01000059
NZ_LLZH01000071	118	115	0	3	133,143	RefSeq:NZ_LLZH01000071
NZ_LLZH01000109	114	112	0	2	124,771	RefSeq:NZ_LLZH01000109
NZ_LLZH01000122	125	124	0	1	124,179	RefSeq:NZ_LLZH01000122
NZ_LLZH01000134	114	113	0	1	120,830	RefSeq:NZ_LLZH01000134
NZ_LLZH01000145	106	105	0	1	120,352	RefSeq:NZ_LLZH01000145
NZ_LLZH01000156	113	110	1	2	118,681	RefSeq:NZ_LLZH01000156
NZ_LLZH01000276	107	103	0	4	112,628	RefSeq:NZ_LLZH01000276
NZ_LLZH01000299	87	85	0	2	111,868	RefSeq:NZ_LLZH01000299
NZ_LLZH01000310	122	117	0	5	109,907	RefSeq:NZ_LLZH01000310
NZ_LLZH01000189	102	102	0	0	107,589	RefSeq:NZ_LLZH01000189
NZ_LLZH01000200	97	95	0	2	104,306	RefSeq:NZ_LLZH01000200
NZ_LLZH01000212	71	68	0	3	102,369	RefSeq:NZ_LLZH01000212
NZ_LLZH01000223	90	80	2	8	100,641	RefSeq:NZ_LLZH01000223
NZ_LLZH01000280	102	96	2	4	100,614	RefSeq:NZ_LLZH01000280
NZ_LLZH01000279	88	84	0	4	99,797	RefSeq:NZ_LLZH01000279
NZ_LLZH01000235	85	83	0	2	96,137	RefSeq:NZ_LLZH01000235
NZ_LLZH01000285	84	80	0	4	92,171	RefSeq:NZ_LLZH01000285
NZ_LLZH01000246	86	83	1	2	91,131	RefSeq:NZ_LLZH01000246
NZ_LLZH01000257	107	102	4	1	91,077	RefSeq:NZ_LLZH01000257
NZ_LLZH01000307	87	83	1	3	89,925	RefSeq:NZ_LLZH01000307
NZ_LLZH01000275	74	74	0	0	87,255	RefSeq:NZ_LLZH01000275
NZ_LLZH01000211	71	67	1	3	84,034	RefSeq:NZ_LLZH01000211
NZ_LLZH01000277	72	71	0	1	81,843	RefSeq:NZ_LLZH01000277
NZ_LLZH01000278	77	75	0	2	81,482	RefSeq:NZ_LLZH01000278
NZ_LLZH01000282	73	71	1	1	79,633	RefSeq:NZ_LLZH01000282
NZ_LLZH01000326	77	75	0	2	79,242	RefSeq:NZ_LLZH01000326
NZ_LLZH01000283	71	67	0	4	77,886	RefSeq:NZ_LLZH01000283
NZ_LLZH01000284	81	81	0	0	77,811	RefSeq:NZ_LLZH01000284
NZ_LLZH01000290	64	62	1	1	74,870	RefSeq:NZ_LLZH01000290
NZ_LLZH01000286	66	65	0	1	74,588	RefSeq:NZ_LLZH01000286
NZ_LLZH01000288	76	76	0	0	74,425	RefSeq:NZ_LLZH01000288
NZ_LLZH01000289	54	54	0	0	74,401	RefSeq:NZ_LLZH01000289
NZ_LLZH01000292	76	75	0	1	72,962	RefSeq:NZ_LLZH01000292
NZ_LLZH01000293	63	60	0	3	72,194	RefSeq:NZ_LLZH01000293
NZ_LLZH01000308	57	56	0	1	71,611	RefSeq:NZ_LLZH01000308
NZ_LLZH01000296	53	51	0	2	71,492	RefSeq:NZ_LLZH01000296
NZ_LLZH01000297	59	57	1	1	66,656	RefSeq:NZ_LLZH01000297
NZ_LLZH01000298	63	61	0	2	66,430	RefSeq:NZ_LLZH01000298
NZ_LLZH01000300	61	59	2	0	65,778	RefSeq:NZ_LLZH01000300
NZ_LLZH01000301	64	64	0	0	63,516	RefSeq:NZ_LLZH01000301
NZ_LLZH01000302	61	61	0	0	62,265	RefSeq:NZ_LLZH01000302
NZ_LLZH01000303	67	63	0	4	62,209	RefSeq:NZ_LLZH01000303
NZ_LLZH01000304	45	42	0	3	61,076	RefSeq:NZ_LLZH01000304
NZ_LLZH01000305	51	50	0	1	60,969	RefSeq:NZ_LLZH01000305
NZ_LLZH01000317	41	41	0	0	57,217	RefSeq:NZ_LLZH01000317
NZ_LLZH01000352	50	49	0	1	56,663	RefSeq:NZ_LLZH01000352
NZ_LLZH01000309	60	59	0	1	56,520	RefSeq:NZ_LLZH01000309
NZ_LLZH01000311	56	54	0	2	55,579	RefSeq:NZ_LLZH01000311
NZ_LLZH01000322	38	38	0	0	52,992	RefSeq:NZ_LLZH01000322
NZ_LLZH01000312	39	39	0	0	52,303	RefSeq:NZ_LLZH01000312
NZ_LLZH01000313	46	46	0	0	51,450	RefSeq:NZ_LLZH01000313
NZ_LLZH01000314	51	51	0	0	51,204	RefSeq:NZ_LLZH01000314
NZ_LLZH01000315	54	53	0	1	51,149	RefSeq:NZ_LLZH01000315
NZ_LLZH01000319	44	43	0	1	50,693	RefSeq:NZ_LLZH01000319
NZ_LLZH01000320	42	38	2	2	49,556	RefSeq:NZ_LLZH01000320
NZ_LLZH01000321	60	59	0	1	49,177	RefSeq:NZ_LLZH01000321
NZ_LLZH01000339	37	35	0	2	47,594	RefSeq:NZ_LLZH01000339
NZ_LLZH01000323	50	47	3	0	47,266	RefSeq:NZ_LLZH01000323
NZ_LLZH01000324	48	47	0	1	47,067	RefSeq:NZ_LLZH01000324
NZ_LLZH01000325	34	34	0	0	45,462	RefSeq:NZ_LLZH01000325
NZ_LLZH01000345	36	36	0	0	44,642	RefSeq:NZ_LLZH01000345
NZ_LLZH01000328	39	38	0	1	44,368	RefSeq:NZ_LLZH01000328
NZ_LLZH01000329	41	40	0	1	43,882	RefSeq:NZ_LLZH01000329
NZ_LLZH01000332	40	40	0	0	43,288	RefSeq:NZ_LLZH01000332
NZ_LLZH01000333	35	34	1	0	42,907	RefSeq:NZ_LLZH01000333
NZ_LLZH01000337	45	37	0	8	41,775	RefSeq:NZ_LLZH01000337
NZ_LLZH01000334	38	36	0	2	41,616	RefSeq:NZ_LLZH01000334
NZ_LLZH01000291	40	39	0	1	41,609	RefSeq:NZ_LLZH01000291
NZ_LLZH01000335	33	30	2	1	41,537	RefSeq:NZ_LLZH01000335
NZ_LLZH01000336	30	29	0	1	40,794	RefSeq:NZ_LLZH01000336
NZ_LLZH01000347	32	31	0	1	40,488	RefSeq:NZ_LLZH01000347
NZ_LLZH01000346	39	37	0	2	39,342	RefSeq:NZ_LLZH01000346
NZ_LLZH01000338	36	34	0	2	39,316	RefSeq:NZ_LLZH01000338
NZ_LLZH01000340	30	30	0	0	38,635	RefSeq:NZ_LLZH01000340
NZ_LLZH01000341	27	27	0	0	38,564	RefSeq:NZ_LLZH01000341
NZ_LLZH01000287	31	31	0	0	38,563	RefSeq:NZ_LLZH01000287
NZ_LLZH01000343	36	36	0	0	38,347	RefSeq:NZ_LLZH01000343
NZ_LLZH01000344	37	34	0	3	38,228	RefSeq:NZ_LLZH01000344
NZ_LLZH01000349	31	31	0	0	36,683	RefSeq:NZ_LLZH01000349
NZ_LLZH01000350	25	25	0	0	36,389	RefSeq:NZ_LLZH01000350
NZ_LLZH01000351	32	32	0	0	36,371	RefSeq:NZ_LLZH01000351
NZ_LLZH01000295	34	33	0	1	36,369	RefSeq:NZ_LLZH01000295
NZ_LLZH01000353	31	31	0	0	35,143	RefSeq:NZ_LLZH01000353
NZ_LLZH01000003	37	36	0	1	34,987	RefSeq:NZ_LLZH01000003
NZ_LLZH01000004	27	27	0	0	34,315	RefSeq:NZ_LLZH01000004
NZ_LLZH01000005	58	25	29	4	34,285	RefSeq:NZ_LLZH01000005
NZ_LLZH01000006	36	33	3	0	33,800	RefSeq:NZ_LLZH01000006
NZ_LLZH01000007	31	29	0	2	33,752	RefSeq:NZ_LLZH01000007
NZ_LLZH01000052	17	16	0	1	33,313	RefSeq:NZ_LLZH01000052
NZ_LLZH01000010	27	24	1	2	31,782	RefSeq:NZ_LLZH01000010
NZ_LLZH01000008	29	27	0	2	31,744	RefSeq:NZ_LLZH01000008
NZ_LLZH01000009	28	28	0	0	31,314	RefSeq:NZ_LLZH01000009
NZ_LLZH01000012	27	26	0	1	31,121	RefSeq:NZ_LLZH01000012
NZ_LLZH01000011	22	22	0	0	28,907	RefSeq:NZ_LLZH01000011
NZ_LLZH01000014	21	19	0	2	26,972	RefSeq:NZ_LLZH01000014
NZ_LLZH01000015	28	27	0	1	26,809	RefSeq:NZ_LLZH01000015
NZ_LLZH01000019	26	26	0	0	26,769	RefSeq:NZ_LLZH01000019
NZ_LLZH01000016	28	27	0	1	26,453	RefSeq:NZ_LLZH01000016
NZ_LLZH01000017	25	25	0	0	26,154	RefSeq:NZ_LLZH01000017
NZ_LLZH01000018	23	23	0	0	25,829	RefSeq:NZ_LLZH01000018
NZ_LLZH01000348	31	27	4	0	25,731	RefSeq:NZ_LLZH01000348
NZ_LLZH01000020	21	20	0	1	24,842	RefSeq:NZ_LLZH01000020
NZ_LLZH01000022	18	17	0	1	24,737	RefSeq:NZ_LLZH01000022
NZ_LLZH01000024	25	24	0	1	23,394	RefSeq:NZ_LLZH01000024
NZ_LLZH01000026	17	16	0	1	23,264	RefSeq:NZ_LLZH01000026
NZ_LLZH01000027	23	21	0	2	20,716	RefSeq:NZ_LLZH01000027
NZ_LLZH01000028	25	25	0	0	20,619	RefSeq:NZ_LLZH01000028
NZ_LLZH01000029	21	20	0	1	20,249	RefSeq:NZ_LLZH01000029
NZ_LLZH01000030	19	18	0	1	20,070	RefSeq:NZ_LLZH01000030
NZ_LLZH01000040	21	21	0	0	20,047	RefSeq:NZ_LLZH01000040
NZ_LLZH01000054	22	20	0	2	19,511	RefSeq:NZ_LLZH01000054
NZ_LLZH01000031	18	15	0	3	19,330	RefSeq:NZ_LLZH01000031
NZ_LLZH01000033	18	18	0	0	18,796	RefSeq:NZ_LLZH01000033
NZ_LLZH01000049	15	14	0	1	18,661	RefSeq:NZ_LLZH01000049
NZ_LLZH01000035	21	21	0	0	16,988	RefSeq:NZ_LLZH01000035
NZ_LLZH01000038	14	14	0	0	16,454	RefSeq:NZ_LLZH01000038
NZ_LLZH01000316	15	14	0	1	16,409	RefSeq:NZ_LLZH01000316
NZ_LLZH01000039	20	20	0	0	16,369	RefSeq:NZ_LLZH01000039
NZ_LLZH01000041	14	13	0	1	15,951	RefSeq:NZ_LLZH01000041
NZ_LLZH01000042	12	12	0	0	15,667	RefSeq:NZ_LLZH01000042
NZ_LLZH01000043	15	15	0	0	15,219	RefSeq:NZ_LLZH01000043
NZ_LLZH01000045	14	12	0	2	14,424	RefSeq:NZ_LLZH01000045
NZ_LLZH01000046	13	13	0	0	14,354	RefSeq:NZ_LLZH01000046
NZ_LLZH01000047	12	12	0	0	13,990	RefSeq:NZ_LLZH01000047
NZ_LLZH01000050	14	14	0	0	12,587	RefSeq:NZ_LLZH01000050
NZ_LLZH01000056	11	9	0	2	8,910	RefSeq:NZ_LLZH01000056
207 Undisplayed Contigs/Replicons	167	161	19	65	395,214

Total:	10,259	9,856	120	283	11,392,731

Ortholog data available?	Yes

Database Contents

Genes	10,245
Pathways	295
Enzymatic Reactions	1,575
Transport Reactions	51
Polypeptides	10,018
Protein Complexes	211
Enzymes	1,266
Transporters	589
Compounds	1,173
Transcription Units	7,259
tRNAs	102
Protein Features	11,271
GO Terms	605

Database Version

29.0

Sequence Source	GCF_001509495.1
Synonyms	Actinoplanes awajinensis subsp. mycoplanecinus
Taxonomic Lineage	cellular organisms Bacteria <bacteria> Terrabacteria group Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes awajinensis Actinoplanes awajinensis mycoplanecinus
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN03327478
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	135947
Annotation Provider	NCBI RefSeq
Annotation Date	2021-12-19
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version	5.3
Annotation Comment	Best-placed reference protein set; GeneMarkS-2+

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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