Summary of Acinetobacter baumannii AB

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii AB_1536-8, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AMHA01000121	147	141	2	4	152,392	RefSeq:NZ_AMHA01000121
NZ_AMHA01000059	129	128	0	1	119,866	RefSeq:NZ_AMHA01000059
NZ_AMHA01000155	85	84	0	1	99,423	RefSeq:NZ_AMHA01000155
NZ_AMHA01000130	98	98	0	0	99,258	RefSeq:NZ_AMHA01000130
NZ_AMHA01000153	104	102	1	1	97,951	RefSeq:NZ_AMHA01000153
NZ_AMHA01000106	96	89	2	5	92,373	RefSeq:NZ_AMHA01000106
NZ_AMHA01000014	88	86	2	0	89,571	RefSeq:NZ_AMHA01000014
NZ_AMHA01000062	74	71	3	0	85,032	RefSeq:NZ_AMHA01000062
NZ_AMHA01000093	72	69	3	0	82,106	RefSeq:NZ_AMHA01000093
NZ_AMHA01000122	64	62	1	1	78,035	RefSeq:NZ_AMHA01000122
NZ_AMHA01000020	77	71	4	2	72,616	RefSeq:NZ_AMHA01000020
NZ_AMHA01000175	67	65	0	2	72,175	RefSeq:NZ_AMHA01000175
NZ_AMHA01000120	67	66	0	1	65,290	RefSeq:NZ_AMHA01000120
NZ_AMHA01000172	52	50	0	2	61,451	RefSeq:NZ_AMHA01000172
NZ_AMHA01000006	60	56	2	2	60,144	RefSeq:NZ_AMHA01000006
NZ_AMHA01000124	45	43	1	1	59,241	RefSeq:NZ_AMHA01000124
NZ_AMHA01000119	53	51	0	2	53,332	RefSeq:NZ_AMHA01000119
NZ_AMHA01000138	44	40	1	3	52,248	RefSeq:NZ_AMHA01000138
NZ_AMHA01000147	48	48	0	0	51,765	RefSeq:NZ_AMHA01000147
NZ_AMHA01000077	68	68	0	0	51,164	RefSeq:NZ_AMHA01000077
NZ_AMHA01000148	45	44	1	0	51,163	RefSeq:NZ_AMHA01000148
NZ_AMHA01000116	51	49	0	2	51,128	RefSeq:NZ_AMHA01000116
NZ_AMHA01000033	45	41	0	4	51,095	RefSeq:NZ_AMHA01000033
NZ_AMHA01000141	46	44	0	2	47,347	RefSeq:NZ_AMHA01000141
NZ_AMHA01000144	36	34	0	2	46,301	RefSeq:NZ_AMHA01000144
NZ_AMHA01000189	41	41	0	0	45,107	RefSeq:NZ_AMHA01000189
NZ_AMHA01000165	46	45	0	1	44,122	RefSeq:NZ_AMHA01000165
NZ_AMHA01000127	36	35	0	1	43,291	RefSeq:NZ_AMHA01000127
NZ_AMHA01000131	30	30	0	0	40,553	RefSeq:NZ_AMHA01000131
NZ_AMHA01000168	35	35	0	0	40,393	RefSeq:NZ_AMHA01000168
NZ_AMHA01000096	38	35	3	0	39,448	RefSeq:NZ_AMHA01000096
NZ_AMHA01000170	33	31	0	2	39,233	RefSeq:NZ_AMHA01000170
NZ_AMHA01000142	31	30	0	1	38,844	RefSeq:NZ_AMHA01000142
NZ_AMHA01000094	37	35	0	2	36,923	RefSeq:NZ_AMHA01000094
NZ_AMHA01000173	35	35	0	0	36,267	RefSeq:NZ_AMHA01000173
NZ_AMHA01000123	36	33	1	2	35,560	RefSeq:NZ_AMHA01000123
NZ_AMHA01000163	39	37	0	2	35,526	RefSeq:NZ_AMHA01000163
NZ_AMHA01000010	33	31	0	2	35,453	RefSeq:NZ_AMHA01000010
NZ_AMHA01000166	37	34	0	3	34,166	RefSeq:NZ_AMHA01000166
NZ_AMHA01000070	31	31	0	0	33,410	RefSeq:NZ_AMHA01000070
NZ_AMHA01000105	30	30	0	0	32,620	RefSeq:NZ_AMHA01000105
NZ_AMHA01000080	28	27	0	1	31,593	RefSeq:NZ_AMHA01000080
NZ_AMHA01000135	25	24	0	1	30,849	RefSeq:NZ_AMHA01000135
NZ_AMHA01000145	26	25	0	1	30,739	RefSeq:NZ_AMHA01000145
NZ_AMHA01000007	30	29	0	1	29,956	RefSeq:NZ_AMHA01000007
NZ_AMHA01000089	39	36	3	0	28,700	RefSeq:NZ_AMHA01000089
NZ_AMHA01000186	24	23	0	1	27,862	RefSeq:NZ_AMHA01000186
NZ_AMHA01000030	26	26	0	0	27,067	RefSeq:NZ_AMHA01000030
NZ_AMHA01000040	23	21	0	2	26,789	RefSeq:NZ_AMHA01000040
NZ_AMHA01000146	22	22	0	0	26,521	RefSeq:NZ_AMHA01000146
NZ_AMHA01000167	28	27	0	1	26,415	RefSeq:NZ_AMHA01000167
NZ_AMHA01000184	21	20	0	1	25,079	RefSeq:NZ_AMHA01000184
NZ_AMHA01000143	20	20	0	0	25,053	RefSeq:NZ_AMHA01000143
NZ_AMHA01000118	19	18	1	0	24,669	RefSeq:NZ_AMHA01000118
NZ_AMHA01000035	18	18	0	0	24,202	RefSeq:NZ_AMHA01000035
NZ_AMHA01000128	23	21	0	2	24,160	RefSeq:NZ_AMHA01000128
NZ_AMHA01000164	21	19	2	0	23,714	RefSeq:NZ_AMHA01000164
NZ_AMHA01000190	17	16	0	1	23,512	RefSeq:NZ_AMHA01000190
NZ_AMHA01000050	19	18	0	1	23,316	RefSeq:NZ_AMHA01000050
NZ_AMHA01000161	23	22	0	1	23,249	RefSeq:NZ_AMHA01000161
NZ_AMHA01000012	23	22	0	1	21,291	RefSeq:NZ_AMHA01000012
NZ_AMHA01000048	24	21	2	1	21,239	RefSeq:NZ_AMHA01000048
NZ_AMHA01000152	21	20	0	1	20,918	RefSeq:NZ_AMHA01000152
NZ_AMHA01000134	24	23	0	1	20,148	RefSeq:NZ_AMHA01000134
NZ_AMHA01000149	21	20	0	1	19,453	RefSeq:NZ_AMHA01000149
NZ_AMHA01000088	19	18	0	1	18,880	RefSeq:NZ_AMHA01000088
NZ_AMHA01000036	21	21	0	0	18,563	RefSeq:NZ_AMHA01000036
NZ_AMHA01000125	12	11	0	1	18,562	RefSeq:NZ_AMHA01000125
NZ_AMHA01000156	16	15	1	0	18,411	RefSeq:NZ_AMHA01000156
NZ_AMHA01000025	17	16	1	0	18,360	RefSeq:NZ_AMHA01000025
NZ_AMHA01000176	23	22	0	1	17,791	RefSeq:NZ_AMHA01000176
NZ_AMHA01000028	15	12	3	0	17,494	RefSeq:NZ_AMHA01000028
NZ_AMHA01000160	15	15	0	0	17,311	RefSeq:NZ_AMHA01000160
NZ_AMHA01000065	14	14	0	0	16,670	RefSeq:NZ_AMHA01000065
NZ_AMHA01000174	17	16	0	1	16,615	RefSeq:NZ_AMHA01000174
NZ_AMHA01000151	19	19	0	0	16,163	RefSeq:NZ_AMHA01000151
NZ_AMHA01000005	20	19	1	0	16,108	RefSeq:NZ_AMHA01000005
NZ_AMHA01000181	15	13	0	2	15,873	RefSeq:NZ_AMHA01000181
NZ_AMHA01000004	14	12	0	2	15,401	RefSeq:NZ_AMHA01000004
NZ_AMHA01000027	13	12	0	1	15,089	RefSeq:NZ_AMHA01000027
NZ_AMHA01000180	11	11	0	0	14,731	RefSeq:NZ_AMHA01000180
NZ_AMHA01000183	17	17	0	0	14,327	RefSeq:NZ_AMHA01000183
NZ_AMHA01000016	17	14	3	0	13,936	RefSeq:NZ_AMHA01000016
NZ_AMHA01000140	13	12	0	1	13,586	RefSeq:NZ_AMHA01000140
NZ_AMHA01000179	14	14	0	0	12,445	RefSeq:NZ_AMHA01000179
NZ_AMHA01000099	13	12	0	1	12,106	RefSeq:NZ_AMHA01000099
NZ_AMHA01000011	12	12	0	0	12,024	RefSeq:NZ_AMHA01000011
107 Undisplayed Contigs/Replicons	341	325	16	68	433,864

Total:	3,650	3,438	60	152	3,844,187

Ortholog data available?	Yes

Database Contents

Genes	3,650
Pathways	262
Enzymatic Reactions	1,291
Transport Reactions	101
Polypeptides	3,514
Protein Complexes	52
Enzymes	781
Transporters	363
Compounds	1,051
Transcription Units	2,651
tRNAs	53
GO Terms	1,264

Database Version

29.0

Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus/baumannii complex Acinetobacter baumannii Acinetobacter baumannii AB_1536-8
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02471274
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	1221244
Annotation Provider	NCBI
Annotation Date	2017-11-23
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	4.3
Annotation Comment	Best-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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