Database Authors
Pallavi Subhraveti1, Peter Midford1, Anamika Kothari1, Ron Caspi1, Peter D Karp1
1SRI International
Summary This Pathway/Genome Database (PGDB) was generated on 01-June-2022 from the annotated genome of Acinetobacter radioresistens SH164, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 26.0) [Karp16, Karp11] using MetaCyc version 26.0 [Caspi20]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutes of Health.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_GG7051311,00295723221,059,412RefSeq:NZ_GG705131
NZ_GG705132889866176954,759RefSeq:NZ_GG705132
NZ_GG705133412400120455,968RefSeq:NZ_GG705133
NZ_GG705134353340103366,125RefSeq:NZ_GG705134
NZ_GG70513515114821162,962RefSeq:NZ_GG705135
NZ_GG70513659500957,971RefSeq:NZ_GG705136
NZ_GG70513755504155,887RefSeq:NZ_GG705137
NZ_GG70513818180019,029RefSeq:NZ_GG705138
NZ_GG7051391010009,672RefSeq:NZ_GG705139
9 Undisplayed Contigs/Replicons11110116,229
Total:2,9612,85068433,158,014
Ortholog data available?Yes
Database Contents
Genes2,961
Pathways262
Enzymatic Reactions1,306
Transport Reactions55
Polypeptides2,872
Protein Complexes66
Enzymes719
Transporters263
Compounds981
Transcription Units2,030
tRNAs61
Protein Features3,573
GO Terms231
Database Version29.0
Sequence SourceGCF_000162115.1
Synonyms Acinetobacter radioresistens strain SH164
Acinetobacter radioresistens str. SH164
Acinetobacter radioresistens SH164
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Gammaproteobacteria
Moraxellales
Moraxellaceae
Acinetobacter
Acinetobacter radioresistens
Acinetobacter radioresistens SH164
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN02463732
NCBI BioProjectPRJNA224116
NCBI-Taxonomy575589
Environmentbiological product [ENVO:02000043]
HostHomo sapiens
Annotation ProviderNCBI RefSeq
Annotation Date2021-11-7
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version5.3
Annotation CommentBest-placed reference protein set; GeneMarkS-2+

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.