Summary of Acinetobacter baumannii AB_2008-15-70, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii AB_2008-15-70, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AMHO01000192	174	168	2	4	187,685	RefSeq:NZ_AMHO01000192
NZ_AMHO01000019	193	190	0	3	184,587	RefSeq:NZ_AMHO01000019
NZ_AMHO01000174	127	119	5	3	129,781	RefSeq:NZ_AMHO01000174
NZ_AMHO01000213	109	106	0	3	120,634	RefSeq:NZ_AMHO01000213
NZ_AMHO01000096	116	110	5	1	120,331	RefSeq:NZ_AMHO01000096
NZ_AMHO01000171	107	104	0	3	109,356	RefSeq:NZ_AMHO01000171
NZ_AMHO01000116	127	126	0	1	104,197	RefSeq:NZ_AMHO01000116
NZ_AMHO01000047	76	73	0	3	78,747	RefSeq:NZ_AMHO01000047
NZ_AMHO01000185	86	86	0	0	78,421	RefSeq:NZ_AMHO01000185
NZ_AMHO01000054	85	75	7	3	76,405	RefSeq:NZ_AMHO01000054
NZ_AMHO01000129	62	59	1	2	74,055	RefSeq:NZ_AMHO01000129
NZ_AMHO01000214	63	61	0	2	71,419	RefSeq:NZ_AMHO01000214
NZ_AMHO01000234	68	66	0	2	70,081	RefSeq:NZ_AMHO01000234
NZ_AMHO01000176	58	56	1	1	68,152	RefSeq:NZ_AMHO01000176
NZ_AMHO01000025	68	63	4	1	65,509	RefSeq:NZ_AMHO01000025
NZ_AMHO01000166	57	55	0	2	65,383	RefSeq:NZ_AMHO01000166
NZ_AMHO01000143	66	60	4	2	64,717	RefSeq:NZ_AMHO01000143
NZ_AMHO01000203	83	83	0	0	61,961	RefSeq:NZ_AMHO01000203
NZ_AMHO01000137	58	57	1	0	60,116	RefSeq:NZ_AMHO01000137
NZ_AMHO01000215	53	52	0	1	58,077	RefSeq:NZ_AMHO01000215
NZ_AMHO01000076	50	44	4	2	57,822	RefSeq:NZ_AMHO01000076
NZ_AMHO01000179	55	54	0	1	57,563	RefSeq:NZ_AMHO01000179
NZ_AMHO01000187	50	49	0	1	56,211	RefSeq:NZ_AMHO01000187
NZ_AMHO01000073	52	51	0	1	55,952	RefSeq:NZ_AMHO01000073
NZ_AMHO01000183	54	54	0	0	54,368	RefSeq:NZ_AMHO01000183
NZ_AMHO01000038	41	37	0	4	53,217	RefSeq:NZ_AMHO01000038
NZ_AMHO01000182	50	48	0	2	52,775	RefSeq:NZ_AMHO01000182
NZ_AMHO01000050	47	45	0	2	52,291	RefSeq:NZ_AMHO01000050
NZ_AMHO01000199	49	47	0	2	50,378	RefSeq:NZ_AMHO01000199
NZ_AMHO01000212	52	47	1	4	48,830	RefSeq:NZ_AMHO01000212
NZ_AMHO01000066	42	39	3	0	45,342	RefSeq:NZ_AMHO01000066
NZ_AMHO01000138	37	35	0	2	44,882	RefSeq:NZ_AMHO01000138
NZ_AMHO01000202	37	36	0	1	43,297	RefSeq:NZ_AMHO01000202
NZ_AMHO01000153	37	36	0	1	42,328	RefSeq:NZ_AMHO01000153
NZ_AMHO01000108	47	45	0	2	42,122	RefSeq:NZ_AMHO01000108
NZ_AMHO01000184	47	45	1	1	40,771	RefSeq:NZ_AMHO01000184
NZ_AMHO01000130	38	35	0	3	40,719	RefSeq:NZ_AMHO01000130
NZ_AMHO01000010	36	33	3	0	39,323	RefSeq:NZ_AMHO01000010
NZ_AMHO01000058	33	32	0	1	36,395	RefSeq:NZ_AMHO01000058
NZ_AMHO01000186	30	28	0	2	35,166	RefSeq:NZ_AMHO01000186
NZ_AMHO01000144	32	32	0	0	32,391	RefSeq:NZ_AMHO01000144
NZ_AMHO01000082	28	28	0	0	31,125	RefSeq:NZ_AMHO01000082
NZ_AMHO01000041	28	25	0	3	29,499	RefSeq:NZ_AMHO01000041
NZ_AMHO01000201	28	26	0	2	28,265	RefSeq:NZ_AMHO01000201
NZ_AMHO01000206	18	16	1	1	27,939	RefSeq:NZ_AMHO01000206
NZ_AMHO01000100	32	30	0	2	27,913	RefSeq:NZ_AMHO01000100
NZ_AMHO01000088	29	27	1	1	27,188	RefSeq:NZ_AMHO01000088
NZ_AMHO01000178	29	28	0	1	26,561	RefSeq:NZ_AMHO01000178
NZ_AMHO01000094	23	23	0	0	25,723	RefSeq:NZ_AMHO01000094
NZ_AMHO01000067	27	26	0	1	25,569	RefSeq:NZ_AMHO01000067
NZ_AMHO01000177	22	21	0	1	25,336	RefSeq:NZ_AMHO01000177
NZ_AMHO01000018	20	18	0	2	24,973	RefSeq:NZ_AMHO01000018
NZ_AMHO01000090	23	21	0	2	24,775	RefSeq:NZ_AMHO01000090
NZ_AMHO01000216	22	21	0	1	23,284	RefSeq:NZ_AMHO01000216
NZ_AMHO01000150	18	17	1	0	23,001	RefSeq:NZ_AMHO01000150
NZ_AMHO01000012	17	16	0	1	22,700	RefSeq:NZ_AMHO01000012
NZ_AMHO01000006	22	21	0	1	22,214	RefSeq:NZ_AMHO01000006
NZ_AMHO01000049	26	26	0	0	20,448	RefSeq:NZ_AMHO01000049
NZ_AMHO01000069	21	19	0	2	20,321	RefSeq:NZ_AMHO01000069
NZ_AMHO01000008	30	27	1	2	19,545	RefSeq:NZ_AMHO01000008
NZ_AMHO01000033	15	15	0	0	18,989	RefSeq:NZ_AMHO01000033
NZ_AMHO01000022	17	15	0	2	18,849	RefSeq:NZ_AMHO01000022
NZ_AMHO01000219	16	15	0	1	18,676	RefSeq:NZ_AMHO01000219
NZ_AMHO01000009	14	14	0	0	17,976	RefSeq:NZ_AMHO01000009
NZ_AMHO01000205	19	19	0	0	17,974	RefSeq:NZ_AMHO01000205
NZ_AMHO01000220	18	16	0	2	17,730	RefSeq:NZ_AMHO01000220
NZ_AMHO01000191	17	17	0	0	17,553	RefSeq:NZ_AMHO01000191
NZ_AMHO01000120	16	14	0	2	17,321	RefSeq:NZ_AMHO01000120
NZ_AMHO01000003	17	15	0	2	16,996	RefSeq:NZ_AMHO01000003
NZ_AMHO01000031	12	9	2	1	16,463	RefSeq:NZ_AMHO01000031
NZ_AMHO01000027	17	14	0	3	16,448	RefSeq:NZ_AMHO01000027
NZ_AMHO01000055	14	13	0	1	16,153	RefSeq:NZ_AMHO01000055
NZ_AMHO01000030	17	17	0	0	15,923	RefSeq:NZ_AMHO01000030
NZ_AMHO01000227	12	10	0	2	15,806	RefSeq:NZ_AMHO01000227
NZ_AMHO01000195	14	12	1	1	15,517	RefSeq:NZ_AMHO01000195
NZ_AMHO01000102	17	14	1	2	15,152	RefSeq:NZ_AMHO01000102
NZ_AMHO01000002	12	12	0	0	14,944	RefSeq:NZ_AMHO01000002
NZ_AMHO01000209	12	12	0	0	14,061	RefSeq:NZ_AMHO01000209
NZ_AMHO01000075	15	15	0	0	13,418	RefSeq:NZ_AMHO01000075
NZ_AMHO01000024	13	12	0	1	13,369	RefSeq:NZ_AMHO01000024
NZ_AMHO01000136	12	8	3	1	12,887	RefSeq:NZ_AMHO01000136
NZ_AMHO01000032	12	11	0	1	12,583	RefSeq:NZ_AMHO01000032
NZ_AMHO01000217	22	22	0	0	12,189	RefSeq:NZ_AMHO01000217
NZ_AMHO01000190	12	10	0	2	12,179	RefSeq:NZ_AMHO01000190
NZ_AMHO01000167	12	12	0	0	11,569	RefSeq:NZ_AMHO01000167
NZ_AMHO01000021	12	11	0	1	11,169	RefSeq:NZ_AMHO01000021
NZ_AMHO01000060	14	14	0	0	9,633	RefSeq:NZ_AMHO01000060
NZ_AMHO01000044	12	11	0	1	8,216	RefSeq:NZ_AMHO01000044
146 Undisplayed Contigs/Replicons	327	322	5	96	374,035

Total:	4,050	3,778	58	214	4,101,914

Ortholog data available?	Yes

Database Contents

Genes	4,049
Pathways	262
Enzymatic Reactions	1,299
Transport Reactions	111
Polypeptides	3,853
Protein Complexes	52
Enzymes	811
Transporters	364
Compounds	1,059
Transcription Units	2,852
tRNAs	52
GO Terms	2,207

Database Version

29.0

Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus/baumannii complex Acinetobacter baumannii Acinetobacter baumannii AB_2008-15-70
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02471250
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	1221259
Environment	tracheal aspirate
Host	Homo sapiens
Annotation Provider	NCBI
Annotation Date	2017-11-23
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	4.3
Annotation Comment	Best-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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