Database Authors
Pallavi Subhraveti1, Anamika Kothari1, Peter Midford1, Ron Caspi1, Lisa Moore1, Peter D Karp1
1SRI International
Summary This Pathway/Genome Database (PGDB) was generated on 29-Oct-2024 from the annotated genome of Acetobacter pasteurianus 386B, as obtained from RefSeq (annotation date: 07-FEB-2024). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 28.5) [1, 2] using MetaCyc version 28.1 [Caspi20]. It has not undergone any manual curation or review, and may contain errors.
Genome
RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NC_0219912,6002,49476302,818,679RefSeq:NC_021991
Apa386Bp1208188020194,780RefSeq:NC_021976
Apa386Bp222210118,169RefSeq:NZ_HF677572
Apa386Bp316150115,601RefSeq:NC_021992
Apa386Bp414120211,105RefSeq:NC_021977
Apa386Bp5139049,914RefSeq:NC_021993
Apa386Bp61010006,548RefSeq:NC_021978
Apa386Bp732013,851RefSeq:NC_021979
Total:2,8862,75176593,078,647
Ortholog data available?No
Database Contents
Genes2,886
Pathways270
Enzymatic Reactions1,473
Transport Reactions55
Polypeptides2,751
Protein Complexes64
Enzymes689
Transporters241
Compounds1,290
Transcription Units1,931
tRNAs57
Protein Features3,410
GO Terms3,701
Database Version29.0
Sequence SourceGCF_000723785.2
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Alphaproteobacteria
Rhodospirillales
Acetobacteraceae
Acetobacter
Acetobacter pasteurianus
Acetobacter pasteurianus 386B
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMEA3139047
NCBI BioProjectPRJNA224116
NCBI-Taxonomy1266844
Annotation ProviderNCBI RefSeq
Annotation Date2024-02-7
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version6.6
Annotation CommentBest-placed reference protein set; GeneMarkS-2+

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC17.