Summary of Acinetobacter baumannii Naval-21, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii Naval-21, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AMSY01000011	231	220	8	3	236,689	RefSeq:NZ_AMSY01000011
NZ_AMSY01000048	229	226	0	3	228,897	RefSeq:NZ_AMSY01000048
NZ_AMSY01000003	194	190	2	2	218,945	RefSeq:NZ_AMSY01000003
NZ_AMSY01000060	161	153	6	2	178,079	RefSeq:NZ_AMSY01000060
NZ_AMSY01000025	168	163	0	5	155,911	RefSeq:NZ_AMSY01000025
NZ_AMSY01000010	141	130	6	5	148,709	RefSeq:NZ_AMSY01000010
NZ_AMSY01000046	143	129	8	6	145,278	RefSeq:NZ_AMSY01000046
NZ_AMSY01000019	131	125	2	4	139,934	RefSeq:NZ_AMSY01000019
NZ_AMSY01000012	127	123	1	3	123,879	RefSeq:NZ_AMSY01000012
NZ_AMSY01000053	116	114	0	2	122,736	RefSeq:NZ_AMSY01000053
NZ_AMSY01000069	101	97	0	4	110,847	RefSeq:NZ_AMSY01000069
NZ_AMSY01000037	88	83	0	5	95,208	RefSeq:NZ_AMSY01000037
NZ_AMSY01000058	109	97	2	10	94,859	RefSeq:NZ_AMSY01000058
NZ_AMSY01000034	100	94	4	2	90,731	RefSeq:NZ_AMSY01000034
NZ_AMSY01000039	85	80	0	5	89,623	RefSeq:NZ_AMSY01000039
NZ_AMSY01000006	73	71	1	1	88,540	RefSeq:NZ_AMSY01000006
NZ_AMSY01000073	82	79	2	1	86,399	RefSeq:NZ_AMSY01000073
NZ_AMSY01000059	75	69	1	5	81,671	RefSeq:NZ_AMSY01000059
NZ_AMSY01000064	73	70	1	2	79,503	RefSeq:NZ_AMSY01000064
NZ_AMSY01000029	84	80	1	3	78,284	RefSeq:NZ_AMSY01000029
NZ_AMSY01000070	73	68	2	3	76,845	RefSeq:NZ_AMSY01000070
NZ_AMSY01000043	76	69	4	3	75,792	RefSeq:NZ_AMSY01000043
NZ_AMSY01000027	67	66	0	1	69,926	RefSeq:NZ_AMSY01000027
NZ_AMSY01000002	70	61	7	2	69,618	RefSeq:NZ_AMSY01000002
NZ_AMSY01000031	65	62	0	3	65,156	RefSeq:NZ_AMSY01000031
NZ_AMSY01000014	61	58	0	3	65,050	RefSeq:NZ_AMSY01000014
NZ_AMSY01000051	84	82	0	2	62,607	RefSeq:NZ_AMSY01000051
NZ_AMSY01000072	50	47	1	2	52,182	RefSeq:NZ_AMSY01000072
NZ_AMSY01000040	59	51	7	1	51,483	RefSeq:NZ_AMSY01000040
NZ_AMSY01000049	43	40	0	3	51,193	RefSeq:NZ_AMSY01000049
NZ_AMSY01000001	42	39	1	2	47,234	RefSeq:NZ_AMSY01000001
NZ_AMSY01000020	42	37	2	3	42,880	RefSeq:NZ_AMSY01000020
NZ_AMSY01000028	31	25	3	3	40,517	RefSeq:NZ_AMSY01000028
NZ_AMSY01000018	41	37	0	4	40,383	RefSeq:NZ_AMSY01000018
NZ_AMSY01000030	47	45	0	2	40,337	RefSeq:NZ_AMSY01000030
NZ_AMSY01000009	35	32	0	3	38,400	RefSeq:NZ_AMSY01000009
NZ_AMSY01000023	34	33	0	1	36,332	RefSeq:NZ_AMSY01000023
NZ_AMSY01000066	32	31	0	1	35,409	RefSeq:NZ_AMSY01000066
NZ_AMSY01000044	38	36	0	2	33,722	RefSeq:NZ_AMSY01000044
NZ_AMSY01000008	29	26	0	3	30,038	RefSeq:NZ_AMSY01000008
NZ_AMSY01000054	31	28	3	0	27,984	RefSeq:NZ_AMSY01000054
NZ_AMSY01000074	24	22	0	2	26,968	RefSeq:NZ_AMSY01000074
NZ_AMSY01000038	27	24	2	1	26,860	RefSeq:NZ_AMSY01000038
NZ_AMSY01000061	24	22	0	2	24,168	RefSeq:NZ_AMSY01000061
NZ_AMSY01000035	22	21	0	1	23,589	RefSeq:NZ_AMSY01000035
NZ_AMSY01000068	20	19	0	1	22,462	RefSeq:NZ_AMSY01000068
NZ_AMSY01000032	18	18	0	0	21,841	RefSeq:NZ_AMSY01000032
NZ_AMSY01000026	24	21	0	3	17,408	RefSeq:NZ_AMSY01000026
NZ_AMSY01000071	20	18	2	0	16,331	RefSeq:NZ_AMSY01000071
NZ_AMSY01000021	15	13	0	2	15,199	RefSeq:NZ_AMSY01000021
NZ_AMSY01000067	15	14	0	1	12,142	RefSeq:NZ_AMSY01000067
NZ_AMSY01000015	12	10	0	2	11,509	RefSeq:NZ_AMSY01000015
23 Undisplayed Contigs/Replicons	49	49	2	25	57,509

Total:	3,858	3,617	81	160	3,923,796

Ortholog data available?	Yes

Database Contents

Genes	3,849
Pathways	266
Enzymatic Reactions	1,292
Transport Reactions	114
Polypeptides	3,631
Protein Complexes	52
Enzymes	785
Transporters	352
Compounds	1,053
Transcription Units	2,681
tRNAs	61
GO Terms	2,123

Database Version

29.0

Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus/baumannii complex Acinetobacter baumannii Acinetobacter baumannii Naval-21
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN00761242
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	903923
Environment	wound
Geographic Location	USA
Collection Date	2006-06-13
Host	Homo sapiens
Annotation Provider	NCBI
Annotation Date	2017-11-23
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	4.3
Annotation Comment	Best-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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