Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [1, 2] component of Pathway Tools software version 24.5 and MetaCyc [3] version 24.1 on 09-Jul-2020 18:48:51.
Genome
RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_CP0381452,2022,06381582,251,645RefSeq:NZ_CP038145
Ortholog data available?Yes
Database Contents
Genes2,202
Pathways248
Enzymatic Reactions1,206
Transport Reactions105
Polypeptides2,067
Protein Complexes41
Enzymes680
Transporters262
Compounds845
Transcription Units1,371
tRNAs58
Protein Features2,891
GO Terms77
Database Version29.0
Sequence SourceGCF_004519515.1
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Gammaproteobacteria
Pasteurellales
Pasteurellaceae
Actinobacillus
Actinobacillus indolicus
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN10918381
NCBI BioProjectPRJNA224116
NCBI-Taxonomy51049
Environmentlung
Geographic LocationChina
Collection Date2016-07
HostSus scrofa
Annotation ProviderNCBI RefSeq
Annotation Date2020-04-3
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version4.11
Annotation CommentBest-placed reference protein set; GeneMarkS-2+
NCBI Genome Typerepresentative


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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.