Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [1, 2] component of Pathway Tools software version 25.0 and MetaCyc [3] version 25.0 on 02-Jul-2021 12:00:45.
Genome
RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_CP0660602,6562,54464483,184,721NCBI Assembly:GCF_016127955.1
unnamed20205,675NCBI Assembly:GCF_016127955.1
Total:2,6582,54466483,190,396
Ortholog data available?No
Database Contents
Genes2,658
Pathways189
Enzymatic Reactions890
Transport Reactions77
Polypeptides2,544
Protein Complexes34
Enzymes538
Transporters292
Compounds684
Transcription Units1,867
tRNAs52
Protein Features3,007
Database Version29.0
Sequence SourceGCF_016127955.1
Synonyms Actinomyces naeslundii genospecies 2
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Terrabacteria group
Actinomycetota
Actinomycetes
Actinomycetales
Actinomycetaceae
Actinomyces
Actinomyces oris
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN16357220
NCBI BioProjectPRJNA224116
NCBI-Taxonomy544580
EnvironmentDSMZ Isolate
Geographic LocationGermany
Annotation ProviderNCBI RefSeq
Annotation Date2020-12-21
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version5.0
Annotation CommentBest-placed reference protein set; GeneMarkS-2+
NCBI Genome Typerepresentative


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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.