Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [Karp16, Karp11] component of Pathway Tools software version 23.0 and MetaCyc [Caspi18] version 23.0 on 08-Feb-2019 18:22:23.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_BCZG01000001533518510600,670RefSeq:NZ_BCZG01000001
NZ_BCZG0100000231831251355,057RefSeq:NZ_BCZG01000002
NZ_BCZG0100000330530302343,008RefSeq:NZ_BCZG01000003
NZ_BCZG0100000431631402335,282RefSeq:NZ_BCZG01000004
NZ_BCZG0100000527227002303,535RefSeq:NZ_BCZG01000005
NZ_BCZG0100000626125245296,558RefSeq:NZ_BCZG01000006
NZ_BCZG0100000726425734269,552RefSeq:NZ_BCZG01000007
NZ_BCZG0100000825825512261,728RefSeq:NZ_BCZG01000008
NZ_BCZG0100000922522014260,001RefSeq:NZ_BCZG01000009
NZ_BCZG0100001019919504218,216RefSeq:NZ_BCZG01000010
NZ_BCZG0100001120420202201,844RefSeq:NZ_BCZG01000011
NZ_BCZG0100001219719007191,283RefSeq:NZ_BCZG01000012
NZ_BCZG0100001317116821184,278RefSeq:NZ_BCZG01000013
NZ_BCZG0100001416515636182,935RefSeq:NZ_BCZG01000014
NZ_BCZG0100001514313913181,367RefSeq:NZ_BCZG01000015
NZ_BCZG0100001617417022178,091RefSeq:NZ_BCZG01000016
NZ_BCZG0100001717817125175,434RefSeq:NZ_BCZG01000017
NZ_BCZG0100002015615231163,850RefSeq:NZ_BCZG01000020
NZ_BCZG0100002113312922151,254RefSeq:NZ_BCZG01000021
NZ_BCZG0100001912412301150,229RefSeq:NZ_BCZG01000019
NZ_BCZG0100002211210822130,196RefSeq:NZ_BCZG01000022
NZ_BCZG0100002310910531116,771RefSeq:NZ_BCZG01000023
NZ_BCZG0100002411210912111,435RefSeq:NZ_BCZG01000024
NZ_BCZG01000025959302110,370RefSeq:NZ_BCZG01000025
NZ_BCZG01000026969141104,650RefSeq:NZ_BCZG01000026
NZ_BCZG0100002794910399,954RefSeq:NZ_BCZG01000027
NZ_BCZG0100002884810399,413RefSeq:NZ_BCZG01000028
NZ_BCZG0100002986860096,914RefSeq:NZ_BCZG01000029
NZ_BCZG0100003088880093,234RefSeq:NZ_BCZG01000030
NZ_BCZG0100003183800382,011RefSeq:NZ_BCZG01000031
NZ_BCZG0100003258551262,478RefSeq:NZ_BCZG01000032
NZ_BCZG0100003349480160,485RefSeq:NZ_BCZG01000033
NZ_BCZG0100003451501054,023RefSeq:NZ_BCZG01000034
NZ_BCZG0100003563620151,943RefSeq:NZ_BCZG01000035
NZ_BCZG0100003650480251,078RefSeq:NZ_BCZG01000036
NZ_BCZG0100003733310248,368RefSeq:NZ_BCZG01000037
NZ_BCZG0100003850446047,287RefSeq:NZ_BCZG01000038
NZ_BCZG0100003932320036,363RefSeq:NZ_BCZG01000039
NZ_BCZG0100004023230032,700RefSeq:NZ_BCZG01000040
NZ_BCZG0100004130271229,165RefSeq:NZ_BCZG01000041
NZ_BCZG0100004225240129,068RefSeq:NZ_BCZG01000042
NZ_BCZG0100004324230124,732RefSeq:NZ_BCZG01000043
NZ_BCZG0100004427270024,516RefSeq:NZ_BCZG01000044
NZ_BCZG0100004519171123,802RefSeq:NZ_BCZG01000045
NZ_BCZG0100001822210121,210RefSeq:NZ_BCZG01000018
NZ_BCZG0100004619180120,456RefSeq:NZ_BCZG01000046
NZ_BCZG0100004724222020,177RefSeq:NZ_BCZG01000047
NZ_BCZG0100005014130114,072RefSeq:NZ_BCZG01000050
NZ_BCZG0100005313102112,114RefSeq:NZ_BCZG01000053
14 Undisplayed Contigs/Replicons37334779,580
Total:6,2256,056621076,792,737
Ortholog data available?No
Database Contents
Genes6,225
Pathways280
Enzymatic Reactions1,685
Transport Reactions121
Polypeptides6,078
Protein Complexes88
Enzymes1,069
Transporters946
Compounds1,351
Transcription Units4,025
tRNAs53
GO Terms1,735
Database Version29.0
Synonyms Achromobacter xylosoxidans ATCC 27061
Achromobacter xylosoxidans ATCC 27061 = NBRC 15126
Achromobacter xylosoxidans NBRC 15126
Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Betaproteobacteria
Burkholderiales
Alcaligenaceae
Achromobacter
Achromobacter xylosoxidans
Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMD00046892
NCBI BioProjectPRJNA224116
NCBI-Taxonomy1216976
Annotation ProviderNCBI
Annotation Date2017-04-5
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version4.1
Annotation CommentBest-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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