Summary of Acaricomes phytoseiuli DSM 14247, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2020 from the annotated genome of Acaricomes phytoseiuli DSM 14247, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 24.0) [Karp16, Karp11] using MetaCyc version 23.5 [Caspi20]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutes of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AQXM01000064	225	218	4	3	245,361	RefSeq:NZ_AQXM01000064
NZ_AQXM01000063	134	122	3	9	142,361	RefSeq:NZ_AQXM01000063
NZ_AQXM01000062	139	130	7	2	133,890	RefSeq:NZ_AQXM01000062
NZ_AQXM01000061	117	109	1	7	122,856	RefSeq:NZ_AQXM01000061
NZ_AQXM01000060	97	90	5	2	110,105	RefSeq:NZ_AQXM01000060
NZ_AQXM01000059	97	95	1	1	107,458	RefSeq:NZ_AQXM01000059
NZ_AQXM01000058	91	85	3	3	99,033	RefSeq:NZ_AQXM01000058
NZ_AQXM01000057	83	78	1	4	93,796	RefSeq:NZ_AQXM01000057
NZ_AQXM01000056	85	80	1	4	91,676	RefSeq:NZ_AQXM01000056
NZ_AQXM01000055	85	79	4	2	91,146	RefSeq:NZ_AQXM01000055
NZ_AQXM01000054	66	63	0	3	84,835	RefSeq:NZ_AQXM01000054
NZ_AQXM01000053	81	72	3	6	84,154	RefSeq:NZ_AQXM01000053
NZ_AQXM01000052	64	63	0	1	77,172	RefSeq:NZ_AQXM01000052
NZ_AQXM01000051	69	66	1	2	71,705	RefSeq:NZ_AQXM01000051
NZ_AQXM01000050	51	51	0	0	64,487	RefSeq:NZ_AQXM01000050
NZ_AQXM01000049	54	51	1	2	56,156	RefSeq:NZ_AQXM01000049
NZ_AQXM01000048	50	47	1	2	49,492	RefSeq:NZ_AQXM01000048
NZ_AQXM01000047	44	40	1	3	46,167	RefSeq:NZ_AQXM01000047
NZ_AQXM01000046	33	32	0	1	43,518	RefSeq:NZ_AQXM01000046
NZ_AQXM01000045	37	34	1	2	43,452	RefSeq:NZ_AQXM01000045
NZ_AQXM01000044	37	29	1	7	43,209	RefSeq:NZ_AQXM01000044
NZ_AQXM01000043	40	38	0	2	42,013	RefSeq:NZ_AQXM01000043
NZ_AQXM01000042	34	32	0	2	34,953	RefSeq:NZ_AQXM01000042
NZ_AQXM01000041	36	36	0	0	33,252	RefSeq:NZ_AQXM01000041
NZ_AQXM01000040	30	25	2	3	32,389	RefSeq:NZ_AQXM01000040
NZ_AQXM01000039	33	32	0	1	30,010	RefSeq:NZ_AQXM01000039
NZ_AQXM01000038	22	20	1	1	25,703	RefSeq:NZ_AQXM01000038
NZ_AQXM01000037	24	23	1	0	24,701	RefSeq:NZ_AQXM01000037
NZ_AQXM01000036	22	21	1	0	22,851	RefSeq:NZ_AQXM01000036
NZ_AQXM01000035	25	23	1	1	22,810	RefSeq:NZ_AQXM01000035
NZ_AQXM01000034	21	19	2	0	20,523	RefSeq:NZ_AQXM01000034
NZ_AQXM01000033	21	20	0	1	20,141	RefSeq:NZ_AQXM01000033
NZ_AQXM01000032	16	14	0	2	18,016	RefSeq:NZ_AQXM01000032
NZ_AQXM01000031	20	17	1	2	17,845	RefSeq:NZ_AQXM01000031
NZ_AQXM01000030	13	13	0	0	16,944	RefSeq:NZ_AQXM01000030
NZ_AQXM01000029	11	10	0	1	16,078	RefSeq:NZ_AQXM01000029
NZ_AQXM01000026	14	13	0	1	9,897	RefSeq:NZ_AQXM01000026
27 Undisplayed Contigs/Replicons	108	102	6	9	129,364

Total:	2,238	2,092	54	92	2,419,519

Ortholog data available?	Yes

Database Contents

Genes	2,238
Pathways	199
Enzymatic Reactions	943
Transport Reactions	41
Polypeptides	2,141
Protein Complexes	30
Enzymes	550
Transporters	172
Compounds	706
Transcription Units	1,556
tRNAs	45
Protein Features	2,555
GO Terms	3

Database Version

29.0

Sequence Source	GCF_000376245.1
Taxonomic Lineage	cellular organisms Bacteria <bacteria> Terrabacteria group Actinomycetota Actinomycetes Micrococcales Micrococcaceae Acaricomes Acaricomes phytoseiuli Acaricomes phytoseiuli DSM 14247
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02441381
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	1120917
Environment	Predatory mite
Geographic Location	Netherlands
Relationship to Oxygen	aerobe
Temperature Range	mesophile
Host	Phytoseiulus persimilis
Annotation Provider	NCBI RefSeq
Annotation Date	2019-12-14
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version	4.10
Annotation Comment	Best-placed reference protein set; GeneMarkS-2+
NCBI Genome Type	representative

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC17.

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