Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [1, 2] component of Pathway Tools software version 24.5 and MetaCyc [3] version 24.1 on 09-Jul-2020 19:03:43.
Genome
RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_CP0292062,1572,03281442,263,191RefSeq:NZ_CP029206
Ortholog data available?Yes
Database Contents
Genes2,157
Pathways235
Enzymatic Reactions1,198
Transport Reactions105
Polypeptides2,036
Protein Complexes37
Enzymes650
Transporters259
Compounds839
Transcription Units1,354
tRNAs58
Protein Features2,936
GO Terms30
Database Version29.0
Sequence SourceGCF_003101015.1
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Gammaproteobacteria
Pasteurellales
Pasteurellaceae
Actinobacillus
Actinobacillus porcitonsillarum
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN08992555
NCBI BioProjectPRJNA224116
NCBI-Taxonomy189834
Geographic LocationCanada
Collection Date1994
HostSus scrofa
Annotation ProviderNCBI RefSeq
Annotation Date2020-04-3
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version4.11
Annotation CommentBest-placed reference protein set; GeneMarkS-2+
NCBI Genome Typerepresentative


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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.