Summary of Acinetobacter baumannii 3909, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii 3909, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AEOZ01000112	119	113	0	6	124,218	RefSeq:NZ_AEOZ01000112
NZ_AEOZ01000004	106	98	0	8	112,827	RefSeq:NZ_AEOZ01000004
NZ_AEOZ01000164	61	59	0	2	72,539	RefSeq:NZ_AEOZ01000164
NZ_AEOZ01000168	69	65	1	3	72,511	RefSeq:NZ_AEOZ01000168
NZ_AEOZ01000098	65	60	0	5	66,270	RefSeq:NZ_AEOZ01000098
NZ_AEOZ01000052	56	52	0	4	62,596	RefSeq:NZ_AEOZ01000052
NZ_AEOZ01000084	50	48	1	1	61,239	RefSeq:NZ_AEOZ01000084
NZ_AEOZ01000118	65	64	1	0	56,920	RefSeq:NZ_AEOZ01000118
NZ_AEOZ01000050	58	56	1	1	54,944	RefSeq:NZ_AEOZ01000050
NZ_AEOZ01000017	53	49	2	2	54,871	RefSeq:NZ_AEOZ01000017
NZ_AEOZ01000016	53	50	0	3	53,419	RefSeq:NZ_AEOZ01000016
NZ_AEOZ01000234	44	40	0	4	47,422	RefSeq:NZ_AEOZ01000234
NZ_AEOZ01000021	49	38	6	5	46,915	RefSeq:NZ_AEOZ01000021
NZ_AEOZ01000157	45	41	2	2	46,364	RefSeq:NZ_AEOZ01000157
NZ_AEOZ01000086	46	41	1	4	45,165	RefSeq:NZ_AEOZ01000086
NZ_AEOZ01000175	42	38	0	4	44,929	RefSeq:NZ_AEOZ01000175
NZ_AEOZ01000018	40	38	0	2	42,908	RefSeq:NZ_AEOZ01000018
NZ_AEOZ01000003	41	37	1	3	41,057	RefSeq:NZ_AEOZ01000003
NZ_AEOZ01000022	40	38	0	2	40,112	RefSeq:NZ_AEOZ01000022
NZ_AEOZ01000078	32	30	0	2	39,287	RefSeq:NZ_AEOZ01000078
NZ_AEOZ01000019	33	31	0	2	39,213	RefSeq:NZ_AEOZ01000019
NZ_AEOZ01000107	35	32	0	3	38,582	RefSeq:NZ_AEOZ01000107
NZ_AEOZ01000067	31	27	3	1	38,051	RefSeq:NZ_AEOZ01000067
NZ_AEOZ01000024	46	42	1	3	37,831	RefSeq:NZ_AEOZ01000024
NZ_AEOZ01000092	32	30	0	2	37,324	RefSeq:NZ_AEOZ01000092
NZ_AEOZ01000091	41	39	0	2	36,500	RefSeq:NZ_AEOZ01000091
NZ_AEOZ01000044	33	31	0	2	35,963	RefSeq:NZ_AEOZ01000044
NZ_AEOZ01000009	29	28	0	1	35,657	RefSeq:NZ_AEOZ01000009
NZ_AEOZ01000162	31	31	0	0	34,990	RefSeq:NZ_AEOZ01000162
NZ_AEOZ01000226	32	29	0	3	34,496	RefSeq:NZ_AEOZ01000226
NZ_AEOZ01000102	31	29	0	2	34,492	RefSeq:NZ_AEOZ01000102
NZ_AEOZ01000113	35	33	0	2	34,480	RefSeq:NZ_AEOZ01000113
NZ_AEOZ01000060	34	30	4	0	34,233	RefSeq:NZ_AEOZ01000060
NZ_AEOZ01000159	26	26	0	0	33,865	RefSeq:NZ_AEOZ01000159
NZ_AEOZ01000155	29	27	0	2	33,674	RefSeq:NZ_AEOZ01000155
NZ_AEOZ01000165	29	27	0	2	33,055	RefSeq:NZ_AEOZ01000165
NZ_AEOZ01000025	24	20	2	2	32,606	RefSeq:NZ_AEOZ01000025
NZ_AEOZ01000061	32	28	0	4	32,534	RefSeq:NZ_AEOZ01000061
NZ_AEOZ01000055	34	30	0	4	32,340	RefSeq:NZ_AEOZ01000055
NZ_AEOZ01000182	33	33	0	0	31,660	RefSeq:NZ_AEOZ01000182
NZ_AEOZ01000031	34	28	4	2	31,596	RefSeq:NZ_AEOZ01000031
NZ_AEOZ01000171	31	30	0	1	31,025	RefSeq:NZ_AEOZ01000171
NZ_AEOZ01000070	34	32	0	2	31,024	RefSeq:NZ_AEOZ01000070
NZ_AEOZ01000163	29	28	0	1	30,389	RefSeq:NZ_AEOZ01000163
NZ_AEOZ01000104	30	26	0	4	28,859	RefSeq:NZ_AEOZ01000104
NZ_AEOZ01000134	25	22	0	3	27,787	RefSeq:NZ_AEOZ01000134
NZ_AEOZ01000006	33	33	0	0	27,605	RefSeq:NZ_AEOZ01000006
NZ_AEOZ01000079	21	20	1	0	27,369	RefSeq:NZ_AEOZ01000079
NZ_AEOZ01000154	27	24	1	2	27,300	RefSeq:NZ_AEOZ01000154
NZ_AEOZ01000153	28	28	0	0	26,931	RefSeq:NZ_AEOZ01000153
NZ_AEOZ01000014	29	26	1	2	26,809	RefSeq:NZ_AEOZ01000014
NZ_AEOZ01000076	23	21	0	2	26,665	RefSeq:NZ_AEOZ01000076
p1ABST78	34	28	0	6	26,411	RefSeq:NZ_AEOZ01000236
NZ_AEOZ01000095	22	18	0	4	26,009	RefSeq:NZ_AEOZ01000095
NZ_AEOZ01000045	21	20	0	1	24,838	RefSeq:NZ_AEOZ01000045
NZ_AEOZ01000041	20	19	0	1	24,703	RefSeq:NZ_AEOZ01000041
NZ_AEOZ01000144	24	21	0	3	24,302	RefSeq:NZ_AEOZ01000144
NZ_AEOZ01000148	24	21	0	3	24,202	RefSeq:NZ_AEOZ01000148
NZ_AEOZ01000049	22	18	1	3	23,828	RefSeq:NZ_AEOZ01000049
NZ_AEOZ01000029	19	18	0	1	23,601	RefSeq:NZ_AEOZ01000029
NZ_AEOZ01000042	25	22	1	2	23,129	RefSeq:NZ_AEOZ01000042
NZ_AEOZ01000206	20	19	0	1	22,274	RefSeq:NZ_AEOZ01000206
NZ_AEOZ01000001	21	18	1	2	22,137	RefSeq:NZ_AEOZ01000001
NZ_AEOZ01000051	17	15	1	1	21,997	RefSeq:NZ_AEOZ01000051
NZ_AEOZ01000027	21	20	0	1	21,996	RefSeq:NZ_AEOZ01000027
NZ_AEOZ01000065	16	15	0	1	21,899	RefSeq:NZ_AEOZ01000065
NZ_AEOZ01000179	18	18	0	0	21,161	RefSeq:NZ_AEOZ01000179
NZ_AEOZ01000225	25	19	4	2	20,843	RefSeq:NZ_AEOZ01000225
NZ_AEOZ01000222	19	16	0	3	20,823	RefSeq:NZ_AEOZ01000222
NZ_AEOZ01000059	22	20	0	2	20,746	RefSeq:NZ_AEOZ01000059
NZ_AEOZ01000136	18	16	1	1	20,243	RefSeq:NZ_AEOZ01000136
NZ_AEOZ01000099	17	16	0	1	20,099	RefSeq:NZ_AEOZ01000099
NZ_AEOZ01000020	17	17	0	0	20,076	RefSeq:NZ_AEOZ01000020
NZ_AEOZ01000166	16	16	0	0	19,715	RefSeq:NZ_AEOZ01000166
NZ_AEOZ01000085	13	12	0	1	19,655	RefSeq:NZ_AEOZ01000085
NZ_AEOZ01000071	17	15	0	2	19,583	RefSeq:NZ_AEOZ01000071
NZ_AEOZ01000075	19	18	0	1	19,072	RefSeq:NZ_AEOZ01000075
NZ_AEOZ01000036	27	25	0	2	18,624	RefSeq:NZ_AEOZ01000036
NZ_AEOZ01000066	12	11	0	1	18,567	RefSeq:NZ_AEOZ01000066
NZ_AEOZ01000156	14	13	0	1	17,791	RefSeq:NZ_AEOZ01000156
NZ_AEOZ01000054	18	17	0	1	17,417	RefSeq:NZ_AEOZ01000054
NZ_AEOZ01000063	15	15	0	0	17,374	RefSeq:NZ_AEOZ01000063
NZ_AEOZ01000057	17	16	0	1	17,149	RefSeq:NZ_AEOZ01000057
NZ_AEOZ01000176	13	13	0	0	17,086	RefSeq:NZ_AEOZ01000176
NZ_AEOZ01000073	18	16	0	2	17,004	RefSeq:NZ_AEOZ01000073
NZ_AEOZ01000201	13	11	0	2	16,944	RefSeq:NZ_AEOZ01000201
NZ_AEOZ01000011	20	19	0	1	16,619	RefSeq:NZ_AEOZ01000011
NZ_AEOZ01000181	14	12	0	2	16,530	RefSeq:NZ_AEOZ01000181
NZ_AEOZ01000203	15	15	0	0	16,458	RefSeq:NZ_AEOZ01000203
NZ_AEOZ01000147	19	18	1	0	16,000	RefSeq:NZ_AEOZ01000147
NZ_AEOZ01000110	15	13	0	2	15,880	RefSeq:NZ_AEOZ01000110
NZ_AEOZ01000143	19	18	0	1	15,873	RefSeq:NZ_AEOZ01000143
NZ_AEOZ01000189	13	13	0	0	15,658	RefSeq:NZ_AEOZ01000189
NZ_AEOZ01000194	16	16	0	0	15,359	RefSeq:NZ_AEOZ01000194
NZ_AEOZ01000103	14	13	0	1	14,924	RefSeq:NZ_AEOZ01000103
NZ_AEOZ01000002	15	10	2	3	14,738	RefSeq:NZ_AEOZ01000002
NZ_AEOZ01000121	15	15	0	0	14,184	RefSeq:NZ_AEOZ01000121
NZ_AEOZ01000093	14	13	0	1	14,026	RefSeq:NZ_AEOZ01000093
NZ_AEOZ01000053	13	12	0	1	13,972	RefSeq:NZ_AEOZ01000053
NZ_AEOZ01000062	15	14	0	1	13,957	RefSeq:NZ_AEOZ01000062
NZ_AEOZ01000048	13	12	0	1	13,830	RefSeq:NZ_AEOZ01000048
NZ_AEOZ01000090	13	12	0	1	13,745	RefSeq:NZ_AEOZ01000090
NZ_AEOZ01000097	12	12	0	0	13,637	RefSeq:NZ_AEOZ01000097
NZ_AEOZ01000178	15	12	1	2	13,571	RefSeq:NZ_AEOZ01000178
NZ_AEOZ01000132	12	12	0	0	13,395	RefSeq:NZ_AEOZ01000132
NZ_AEOZ01000142	13	11	0	2	12,770	RefSeq:NZ_AEOZ01000142
NZ_AEOZ01000207	13	13	0	0	12,364	RefSeq:NZ_AEOZ01000207
NZ_AEOZ01000080	16	14	1	1	11,999	RefSeq:NZ_AEOZ01000080
NZ_AEOZ01000023	11	10	0	1	11,786	RefSeq:NZ_AEOZ01000023
NZ_AEOZ01000195	13	11	0	2	11,766	RefSeq:NZ_AEOZ01000195
NZ_AEOZ01000187	13	11	0	2	11,723	RefSeq:NZ_AEOZ01000187
NZ_AEOZ01000127	12	9	0	3	11,511	RefSeq:NZ_AEOZ01000127
NZ_AEOZ01000170	14	13	1	0	11,469	RefSeq:NZ_AEOZ01000170
NZ_AEOZ01000101	17	16	0	1	11,290	RefSeq:NZ_AEOZ01000101
NZ_AEOZ01000074	15	14	0	1	11,098	RefSeq:NZ_AEOZ01000074
NZ_AEOZ01000039	12	11	0	1	10,758	RefSeq:NZ_AEOZ01000039
NZ_AEOZ01000106	15	15	0	0	10,738	RefSeq:NZ_AEOZ01000106
NZ_AEOZ01000191	13	12	0	1	10,294	RefSeq:NZ_AEOZ01000191
NZ_AEOZ01000167	13	10	0	3	9,580	RefSeq:NZ_AEOZ01000167
117 Undisplayed Contigs/Replicons	460	454	6	69	570,614

Total:	3,783	3,453	54	276	3,954,832

Ortholog data available?	Yes

Database Contents

Genes	3,783
Pathways	262
Enzymatic Reactions	1,263
Transport Reactions	107
Polypeptides	3,541
Protein Complexes	52
Enzymes	743
Transporters	339
Compounds	1,037
Transcription Units	2,704
tRNAs	48
GO Terms	1,241

Database Version

29.0

Synonyms	Acinetobacter baumannii str. 3909 Acinetobacter baumannii strain 3909 Acinetobacter baumannii 3909
Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus/baumannii complex Acinetobacter baumannii Acinetobacter baumannii 3909
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02471606
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	886889
Annotation Provider	NCBI
Annotation Date	2017-11-22
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	4.3
Annotation Comment	Best-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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