Summary of Acinetobacter sp. NCTC 10304, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter sp. NCTC 10304 NCTC 10304, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AIEE01000001	88	79	4	5	88,932	RefSeq:NZ_AIEE01000001
NZ_AIEE01000002	90	85	0	5	87,607	RefSeq:NZ_AIEE01000002
NZ_AIEE01000003	63	60	0	3	71,611	RefSeq:NZ_AIEE01000003
NZ_AIEE01000004	63	56	1	6	71,559	RefSeq:NZ_AIEE01000004
NZ_AIEE01000005	59	57	0	2	66,101	RefSeq:NZ_AIEE01000005
NZ_AIEE01000006	67	61	1	5	65,892	RefSeq:NZ_AIEE01000006
NZ_AIEE01000007	54	47	1	6	63,860	RefSeq:NZ_AIEE01000007
NZ_AIEE01000008	60	53	2	5	60,645	RefSeq:NZ_AIEE01000008
NZ_AIEE01000009	51	45	4	2	56,034	RefSeq:NZ_AIEE01000009
NZ_AIEE01000010	67	63	0	4	53,745	RefSeq:NZ_AIEE01000010
NZ_AIEE01000011	53	46	0	7	50,615	RefSeq:NZ_AIEE01000011
NZ_AIEE01000012	45	39	1	5	50,535	RefSeq:NZ_AIEE01000012
NZ_AIEE01000013	50	47	0	3	50,236	RefSeq:NZ_AIEE01000013
NZ_AIEE01000014	46	40	1	5	49,981	RefSeq:NZ_AIEE01000014
NZ_AIEE01000015	46	37	1	8	45,080	RefSeq:NZ_AIEE01000015
NZ_AIEE01000016	41	35	0	6	44,499	RefSeq:NZ_AIEE01000016
NZ_AIEE01000017	53	45	0	8	44,448	RefSeq:NZ_AIEE01000017
NZ_AIEE01000018	39	34	0	5	44,318	RefSeq:NZ_AIEE01000018
NZ_AIEE01000019	44	41	1	2	43,823	RefSeq:NZ_AIEE01000019
NZ_AIEE01000020	48	40	0	8	43,358	RefSeq:NZ_AIEE01000020
NZ_AIEE01000021	39	35	0	4	42,733	RefSeq:NZ_AIEE01000021
NZ_AIEE01000022	42	39	0	3	42,325	RefSeq:NZ_AIEE01000022
NZ_AIEE01000023	47	39	0	8	41,513	RefSeq:NZ_AIEE01000023
NZ_AIEE01000024	40	32	0	8	41,422	RefSeq:NZ_AIEE01000024
NZ_AIEE01000025	43	37	0	6	40,716	RefSeq:NZ_AIEE01000025
NZ_AIEE01000026	34	31	0	3	40,320	RefSeq:NZ_AIEE01000026
NZ_AIEE01000027	36	32	0	4	39,723	RefSeq:NZ_AIEE01000027
NZ_AIEE01000028	42	38	0	4	38,770	RefSeq:NZ_AIEE01000028
NZ_AIEE01000029	40	36	0	4	38,071	RefSeq:NZ_AIEE01000029
NZ_AIEE01000030	50	45	3	2	37,087	RefSeq:NZ_AIEE01000030
NZ_AIEE01000031	32	24	3	5	36,845	RefSeq:NZ_AIEE01000031
NZ_AIEE01000032	34	29	0	5	36,808	RefSeq:NZ_AIEE01000032
NZ_AIEE01000033	35	31	0	4	35,243	RefSeq:NZ_AIEE01000033
NZ_AIEE01000034	36	32	2	2	34,264	RefSeq:NZ_AIEE01000034
NZ_AIEE01000035	29	22	0	7	33,592	RefSeq:NZ_AIEE01000035
NZ_AIEE01000036	31	27	0	4	32,479	RefSeq:NZ_AIEE01000036
NZ_AIEE01000037	31	25	3	3	32,342	RefSeq:NZ_AIEE01000037
NZ_AIEE01000038	28	23	0	5	31,440	RefSeq:NZ_AIEE01000038
NZ_AIEE01000039	33	28	1	4	31,317	RefSeq:NZ_AIEE01000039
NZ_AIEE01000040	26	24	1	1	30,677	RefSeq:NZ_AIEE01000040
NZ_AIEE01000041	32	28	0	4	29,771	RefSeq:NZ_AIEE01000041
NZ_AIEE01000042	31	28	1	2	29,600	RefSeq:NZ_AIEE01000042
NZ_AIEE01000043	27	21	1	5	28,798	RefSeq:NZ_AIEE01000043
NZ_AIEE01000044	26	21	0	5	27,529	RefSeq:NZ_AIEE01000044
NZ_AIEE01000045	24	19	0	5	27,247	RefSeq:NZ_AIEE01000045
NZ_AIEE01000046	25	20	0	5	27,064	RefSeq:NZ_AIEE01000046
NZ_AIEE01000047	27	23	0	4	25,790	RefSeq:NZ_AIEE01000047
NZ_AIEE01000048	26	24	0	2	25,217	RefSeq:NZ_AIEE01000048
NZ_AIEE01000049	21	20	1	0	25,193	RefSeq:NZ_AIEE01000049
NZ_AIEE01000050	28	25	0	3	25,128	RefSeq:NZ_AIEE01000050
NZ_AIEE01000051	23	18	0	5	25,078	RefSeq:NZ_AIEE01000051
NZ_AIEE01000052	27	25	2	0	24,767	RefSeq:NZ_AIEE01000052
NZ_AIEE01000053	17	12	1	4	23,868	RefSeq:NZ_AIEE01000053
NZ_AIEE01000054	22	19	0	3	23,812	RefSeq:NZ_AIEE01000054
NZ_AIEE01000055	13	10	0	3	23,300	RefSeq:NZ_AIEE01000055
NZ_AIEE01000056	26	23	0	3	22,862	RefSeq:NZ_AIEE01000056
NZ_AIEE01000057	23	21	1	1	22,699	RefSeq:NZ_AIEE01000057
NZ_AIEE01000058	22	16	0	6	22,436	RefSeq:NZ_AIEE01000058
NZ_AIEE01000059	20	17	0	3	22,358	RefSeq:NZ_AIEE01000059
NZ_AIEE01000060	24	22	1	1	22,127	RefSeq:NZ_AIEE01000060
NZ_AIEE01000061	17	16	0	1	21,743	RefSeq:NZ_AIEE01000061
NZ_AIEE01000062	23	20	0	3	20,904	RefSeq:NZ_AIEE01000062
NZ_AIEE01000063	18	15	1	2	20,871	RefSeq:NZ_AIEE01000063
NZ_AIEE01000064	18	16	0	2	20,855	RefSeq:NZ_AIEE01000064
NZ_AIEE01000065	21	17	0	4	20,718	RefSeq:NZ_AIEE01000065
NZ_AIEE01000066	26	25	1	0	20,258	RefSeq:NZ_AIEE01000066
NZ_AIEE01000067	22	20	1	1	20,168	RefSeq:NZ_AIEE01000067
NZ_AIEE01000068	16	11	0	5	20,081	RefSeq:NZ_AIEE01000068
NZ_AIEE01000069	12	7	4	1	20,069	RefSeq:NZ_AIEE01000069
NZ_AIEE01000070	12	10	0	2	19,761	RefSeq:NZ_AIEE01000070
NZ_AIEE01000071	19	14	2	3	19,708	RefSeq:NZ_AIEE01000071
NZ_AIEE01000072	16	12	0	4	19,525	RefSeq:NZ_AIEE01000072
NZ_AIEE01000073	14	10	0	4	18,911	RefSeq:NZ_AIEE01000073
NZ_AIEE01000074	16	15	1	0	18,752	RefSeq:NZ_AIEE01000074
NZ_AIEE01000075	18	14	0	4	17,583	RefSeq:NZ_AIEE01000075
NZ_AIEE01000076	15	14	0	1	17,447	RefSeq:NZ_AIEE01000076
NZ_AIEE01000078	19	17	0	2	16,520	RefSeq:NZ_AIEE01000078
NZ_AIEE01000079	22	21	0	1	16,443	RefSeq:NZ_AIEE01000079
NZ_AIEE01000080	20	17	0	3	16,421	RefSeq:NZ_AIEE01000080
NZ_AIEE01000081	13	11	0	2	16,406	RefSeq:NZ_AIEE01000081
NZ_AIEE01000082	16	15	0	1	16,201	RefSeq:NZ_AIEE01000082
NZ_AIEE01000083	19	19	0	0	15,946	RefSeq:NZ_AIEE01000083
NZ_AIEE01000084	14	10	0	4	15,653	RefSeq:NZ_AIEE01000084
NZ_AIEE01000085	12	9	0	3	15,447	RefSeq:NZ_AIEE01000085
NZ_AIEE01000086	13	11	0	2	15,418	RefSeq:NZ_AIEE01000086
NZ_AIEE01000087	15	13	2	0	15,382	RefSeq:NZ_AIEE01000087
NZ_AIEE01000088	16	13	0	3	15,209	RefSeq:NZ_AIEE01000088
NZ_AIEE01000089	21	15	0	6	15,206	RefSeq:NZ_AIEE01000089
NZ_AIEE01000090	13	11	0	2	14,867	RefSeq:NZ_AIEE01000090
NZ_AIEE01000091	11	8	0	3	14,843	RefSeq:NZ_AIEE01000091
NZ_AIEE01000092	16	15	0	1	14,646	RefSeq:NZ_AIEE01000092
NZ_AIEE01000093	14	11	0	3	14,501	RefSeq:NZ_AIEE01000093
NZ_AIEE01000094	13	12	0	1	14,152	RefSeq:NZ_AIEE01000094
NZ_AIEE01000095	14	11	0	3	14,053	RefSeq:NZ_AIEE01000095
NZ_AIEE01000096	13	11	1	1	13,634	RefSeq:NZ_AIEE01000096
NZ_AIEE01000097	12	10	0	2	13,580	RefSeq:NZ_AIEE01000097
NZ_AIEE01000098	19	19	0	0	13,436	RefSeq:NZ_AIEE01000098
NZ_AIEE01000100	13	12	0	1	12,906	RefSeq:NZ_AIEE01000100
NZ_AIEE01000102	13	13	0	0	12,551	RefSeq:NZ_AIEE01000102
NZ_AIEE01000109	14	13	0	1	11,671	RefSeq:NZ_AIEE01000109
NZ_AIEE01000110	13	11	0	2	11,298	RefSeq:NZ_AIEE01000110
NZ_AIEE01000111	12	11	0	1	11,212	RefSeq:NZ_AIEE01000111
NZ_AIEE01000112	11	8	0	3	11,156	RefSeq:NZ_AIEE01000112
NZ_AIEE01000113	11	10	0	1	10,864	RefSeq:NZ_AIEE01000113
NZ_AIEE01000118	17	16	0	1	10,479	RefSeq:NZ_AIEE01000118
NZ_AIEE01000126	12	11	0	1	9,099	RefSeq:NZ_AIEE01000126
NZ_AIEE01000128	13	11	0	2	9,088	RefSeq:NZ_AIEE01000128
NZ_AIEE01000137	12	7	0	5	8,454	RefSeq:NZ_AIEE01000137
NZ_AIEE01000149	12	8	3	1	7,724	RefSeq:NZ_AIEE01000149
NZ_AIEE01000152	13	10	0	3	7,611	RefSeq:NZ_AIEE01000152
NZ_AIEE01000178	12	7	0	5	5,667	RefSeq:NZ_AIEE01000178
263 Undisplayed Contigs/Replicons	670	654	17	311	986,901

Total:	4,107	3,368	71	668	4,157,209

Ortholog data available?	Yes

Database Contents

Genes	4,106
Pathways	216
Enzymatic Reactions	1,370
Transport Reactions	9
Polypeptides	3,487
Protein Complexes	27
Enzymes	618
Transporters	344
Compounds	1,113
Transcription Units	2,947
tRNAs	59
GO Terms	1,234

Database Version

29.0

Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. NCTC 10304
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02471591
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	981224
Environment	conjunctiva
Collection Date	1962-01-1
Annotation Provider	NCBI RefSeq
Annotation Date	2019-01-14
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	4.7
Annotation Comment	Best-placed reference protein set; GeneMarkS-2+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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