Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [1, 2] component of Pathway Tools software version 24.5 and MetaCyc [3] version 24.1 on 09-Jul-2020 18:42:01.
Genome
RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_CP0251983,1553,01664753,432,872RefSeq:NZ_CP025198
Ortholog data available?Yes
Database Contents
Genes3,155
Pathways230
Enzymatic Reactions1,089
Transport Reactions79
Polypeptides3,018
Protein Complexes59
Enzymes644
Transporters331
Compounds822
Transcription Units2,149
tRNAs52
Protein Features3,648
Database Version29.0
Sequence SourceGCF_003325455.1
Synonyms Acidipropionibacterium sp. JS278
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Terrabacteria group
Actinomycetota
Actinomycetes
Propionibacteriales
Propionibacteriaceae
Acidipropionibacterium
Acidipropionibacterium virtanenii
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN08125534
NCBI BioProjectPRJNA224116
NCBI-Taxonomy2057246
Environmentbarley grains
Geographic LocationFinland
Collection Date2012
Annotation ProviderNCBI RefSeq
Annotation Date2019-08-16
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version4.8
Annotation CommentBest-placed reference protein set; GeneMarkS-2+
NCBI Genome Typerepresentative



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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC17A.