Summary of Schistosoma mansoni, version 29.0

Tier 2 Curated Organism Database

Database Authors

Adhemar Zerlotini Neto, FIOCRUZ

Summary

This Pathway/Genome Database (PGDB) was created by Adhemar Zerlotini Neto of SchistoDB from the annotated genome using the PathoLogic component of the Pathway Tools software [Karp11, Karp19] and the MetaCyc reference database [Caspi20]. The PGDB, which integrates the biochemical reaction network and metabolic pathways of the organism with its genome, was improved by limited manual curation.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)
20080501 Smp_scaff000001.embl.fixed	172	172	0	0	4,179,495
20080501 Smp_scaff000005.embl.fixed	106	106	0	0	3,831,198
20080501 Smp_scaff000017.embl.fixed	62	62	0	0	2,939,958
20080501 Smp_scaff000103.embl.fixed	85	85	0	0	2,841,849
20080501 Smp_scaff000006.embl.fixed	88	88	0	0	2,731,096
20080501 Smp_scaff000078.embl.fixed	107	107	0	0	2,523,220
20080501 Smp_scaff000050.embl.fixed	80	80	0	0	2,487,909
20080501 Smp_scaff000036.embl.fixed	75	75	0	0	2,467,244
20080501 Smp_scaff000008.embl.fixed	71	71	0	0	2,460,020
20080501 Smp_scaff000026.embl.fixed	56	56	0	0	2,372,758
20080501 Smp_scaff000131.embl.fixed	65	65	0	0	2,290,839
20080501 Smp_scaff000022.embl.fixed	63	63	0	0	2,279,031
20080501 Smp_scaff000004.embl.fixed	74	74	0	0	2,218,116
20080501 Smp_scaff000002.embl.fixed	59	57	0	2	2,211,188
20080501 Smp_scaff000102.embl.fixed	79	79	0	0	2,197,817
20080501 Smp_scaff000014.embl.fixed	52	52	0	0	2,066,202
20080501 Smp_scaff000021.embl.fixed	75	75	0	0	1,996,897
20080501 Smp_scaff000038.embl.fixed	66	66	0	0	1,989,733
20080501 Smp_scaff000049.embl.fixed	61	61	0	0	1,987,757
20080501 Smp_scaff000063.embl.fixed	82	82	0	0	1,959,052
20080501 Smp_scaff000075.embl.fixed	75	75	0	0	1,929,245
20080501 Smp_scaff000101.embl.fixed	54	54	0	0	1,906,771
20080501 Smp_scaff000016.embl.fixed	64	63	0	1	1,877,727
20080501 Smp_scaff000034.embl.fixed	54	54	0	0	1,869,634
20080501 Smp_scaff000129.embl.fixed	48	48	0	0	1,843,293
20080501 Smp_scaff000003.embl.fixed	52	52	0	0	1,818,661
20080501 Smp_scaff000040.embl.fixed	50	50	0	0	1,760,029
20080501 Smp_scaff000127.embl.fixed	71	70	0	1	1,755,636
20080501 Smp_scaff000125.embl.fixed	48	47	0	1	1,752,076
20080501 Smp_scaff000264.embl.fixed	44	44	0	0	1,747,884
20080501 Smp_scaff000099.embl.fixed	47	47	0	0	1,744,414
20080501 Smp_scaff000074.embl.fixed	63	63	0	0	1,734,107
20080501 Smp_scaff000048.embl.fixed	55	55	0	0	1,665,074
20080501 Smp_scaff000011.embl.fixed	55	55	0	0	1,639,383
20080501 Smp_scaff000007.embl.fixed	69	69	0	0	1,638,906
20080501 Smp_scaff000013.embl.fixed	52	52	0	0	1,637,270
20080501 Smp_scaff000035.embl.fixed	61	61	0	0	1,622,525
20080501 Smp_scaff000030.embl.fixed	43	43	0	0	1,608,513
20080501 Smp_scaff000159.embl.fixed	68	68	0	0	1,591,796
20080501 Smp_scaff000077.embl.fixed	42	42	0	0	1,589,600
20080501 Smp_scaff000126.embl.fixed	55	55	0	0	1,580,399
20080501 Smp_scaff000100.embl.fixed	46	46	0	0	1,567,898
20080501 Smp_scaff000018.embl.fixed	51	51	0	0	1,565,620
20080501 Smp_scaff000039.embl.fixed	34	34	0	0	1,558,831
20080501 Smp_scaff000130.embl.fixed	54	54	0	0	1,530,086
20080501 Smp_scaff000015.embl.fixed	46	46	0	0	1,525,021
20080501 Smp_scaff000020.embl.fixed	53	53	0	0	1,504,024
20080501 Smp_scaff000010.embl.fixed	60	60	0	0	1,497,643
20080501 Smp_scaff000199.embl.fixed	43	43	0	0	1,436,906
20080501 Smp_scaff000012.embl.fixed	50	50	0	0	1,417,724
20080501 Smp_scaff000059.embl.fixed	48	48	0	0	1,417,180
20080501 Smp_scaff000062.embl.fixed	36	36	0	0	1,412,270
20080501 Smp_scaff000201.embl.fixed	35	35	0	0	1,396,776
20080501 Smp_scaff000025.embl.fixed	51	51	0	0	1,332,955
20080501 Smp_scaff000096.embl.fixed	37	37	0	0	1,318,182
20080501 Smp_scaff000019.embl.fixed	50	50	0	0	1,312,397
20080501 Smp_scaff000128.embl.fixed	24	24	0	0	1,293,325
20080501 Smp_scaff000057.embl.fixed	38	38	0	0	1,283,102
20080501 Smp_scaff000123.embl.fixed	49	49	0	0	1,275,278
20080501 Smp_scaff000265.embl.fixed	40	40	0	0	1,266,872
20080501 Smp_scaff000156.embl.fixed	28	28	0	0	1,261,525
20080501 Smp_scaff000200.embl.fixed	31	31	0	0	1,261,227
20080501 Smp_scaff000045.embl.fixed	39	39	0	0	1,248,659
20080501 Smp_scaff000160.embl.fixed	43	43	0	0	1,242,129
20080501 Smp_scaff000043.embl.fixed	38	38	0	0	1,235,922
20080501 Smp_scaff000263.embl.fixed	50	50	0	0	1,221,457
20080501 Smp_scaff000098.embl.fixed	24	24	0	0	1,208,311
20080501 Smp_scaff000033.embl.fixed	33	33	0	0	1,206,546
20080501 Smp_scaff000068.embl.fixed	45	45	0	0	1,203,854
20080501 Smp_scaff000157.embl.fixed	29	29	0	0	1,199,720
20080501 Smp_scaff000046.embl.fixed	43	43	0	0	1,192,605
20080501 Smp_scaff000027.embl.fixed	43	43	0	0	1,184,617
20080501 Smp_scaff000024.embl.fixed	38	38	0	0	1,173,380
20080501 Smp_scaff000029.embl.fixed	40	40	0	0	1,163,422
20080501 Smp_scaff000044.embl.fixed	52	52	0	0	1,160,491
20080501 Smp_scaff000116.embl.fixed	49	49	0	0	1,160,318
20080501 Smp_scaff000097.embl.fixed	33	33	0	0	1,157,520
20080501 Smp_scaff000257.embl.fixed	48	48	0	0	1,141,791
20080501 Smp_scaff000073.embl.fixed	34	34	0	0	1,106,606
20080501 Smp_scaff000061.embl.fixed	38	38	0	0	1,100,056
20080501 Smp_scaff000119.embl.fixed	37	37	0	0	1,096,610
20080501 Smp_scaff002008.embl.fixed	42	42	0	0	1,075,267
20080501 Smp_scaff000262.embl.fixed	36	36	0	0	1,072,260
20080501 Smp_scaff000120.embl.fixed	32	32	0	0	1,068,542
20080501 Smp_scaff000121.embl.fixed	43	43	0	0	1,068,418
20080501 Smp_scaff000076.embl.fixed	35	35	0	0	1,065,780
20080501 Smp_scaff000629.embl.fixed	32	32	0	0	1,064,850
20080501 Smp_scaff000070.embl.fixed	37	37	0	0	1,064,087
20080501 Smp_scaff000056.embl.fixed	31	31	0	0	1,041,241
20080501 Smp_scaff000118.embl.fixed	32	32	0	0	1,038,667
20080501 Smp_scaff000071.embl.fixed	40	40	0	0	1,033,326
20080501 Smp_scaff000193.embl.fixed	38	38	0	0	1,031,991
20080501 Smp_scaff000155.embl.fixed	34	34	0	0	1,025,334
20080501 Smp_scaff000124.embl.fixed	21	21	0	0	1,024,122
20080501 Smp_scaff000149.embl.fixed	40	40	0	0	1,023,094
20080501 Smp_scaff000055.embl.fixed	35	35	0	0	1,017,060
20080501 Smp_scaff000089.embl.fixed	31	31	0	0	1,014,816
20080501 Smp_scaff000031.embl.fixed	29	29	0	0	1,014,221
20080501 Smp_scaff000058.embl.fixed	43	43	0	0	1,009,657
20080501 Smp_scaff000154.embl.fixed	36	36	0	0	992,244
20080501 Smp_scaff000032.embl.fixed	24	24	0	0	992,096
20080501 Smp_scaff000060.embl.fixed	27	27	0	0	988,485
20080501 Smp_scaff000196.embl.fixed	34	34	0	0	981,890
20080501 Smp_scaff000041.embl.fixed	31	31	0	0	981,565
20080501 Smp_scaff000144.embl.fixed	33	33	0	0	974,603
20080501 Smp_scaff000122.embl.fixed	18	18	0	0	970,226
20080501 Smp_scaff000042.embl.fixed	40	40	0	0	969,290
20080501 Smp_scaff000260.embl.fixed	24	24	0	0	961,654
20080501 Smp_scaff000251.embl.fixed	46	46	0	0	961,116
20080501 Smp_scaff000047.embl.fixed	24	23	0	1	959,487
20080501 Smp_scaff000090.embl.fixed	24	24	0	0	948,678
20080501 Smp_scaff000023.embl.fixed	34	34	0	0	945,781
20080501 Smp_scaff000254.embl.fixed	28	28	0	0	936,760
20080501 Smp_scaff000256.embl.fixed	30	30	0	0	934,866
20080501 Smp_scaff000261.embl.fixed	25	25	0	0	919,636
20080501 Smp_scaff000142.embl.fixed	32	32	0	0	916,725
20080501 Smp_scaff000244.embl.fixed	43	43	0	0	915,868
20080501 Smp_scaff000009.embl.fixed	37	37	0	0	913,214
20080501 Smp_scaff000192.embl.fixed	31	31	0	0	906,818
20080501 Smp_scaff000114.embl.fixed	25	25	0	0	906,673
20080501 Smp_scaff000198.embl.fixed	31	31	0	0	899,742
20080501 Smp_scaff000195.embl.fixed	22	22	0	0	893,326
20080501 Smp_scaff000255.embl.fixed	36	36	0	0	893,227
20080501 Smp_scaff000258.embl.fixed	41	41	0	0	881,302
20080501 Smp_scaff000158.embl.fixed	34	34	0	0	880,511
20080501 Smp_scaff000146.embl.fixed	25	25	0	0	879,876
20080501 Smp_scaff000072.embl.fixed	31	31	0	0	875,107
20080501 Smp_scaff000153.embl.fixed	22	22	0	0	872,276
20080501 Smp_scaff000028.embl.fixed	28	28	0	0	871,402
20080501 Smp_scaff000253.embl.fixed	34	34	0	0	862,853
20080501 Smp_scaff000246.embl.fixed	36	36	0	0	861,131
20080501 Smp_scaff000093.embl.fixed	44	44	0	0	859,783
20080501 Smp_scaff000188.embl.fixed	39	39	0	0	853,554
20080501 Smp_scaff000247.embl.fixed	26	26	0	0	852,167
20080501 Smp_scaff000151.embl.fixed	23	23	0	0	837,104
20080501 Smp_scaff000152.embl.fixed	23	23	0	0	832,541
20080501 Smp_scaff000189.embl.fixed	27	27	0	0	824,505
20080501 Smp_scaff000259.embl.fixed	22	22	0	0	820,742
20080501 Smp_scaff000053.embl.fixed	25	25	0	0	818,357
20080501 Smp_scaff000037.embl.fixed	38	38	0	0	810,953
20080501 Smp_scaff000069.embl.fixed	19	19	0	0	810,511
20080501 Smp_scaff000140.embl.fixed	22	22	0	0	808,993
20080501 Smp_scaff000115.embl.fixed	26	26	0	0	798,747
20080501 Smp_scaff000236.embl.fixed	27	27	0	0	796,189
20080501 Smp_scaff000241.embl.fixed	23	23	0	0	792,810
20080501 Smp_scaff000084.embl.fixed	25	25	0	0	782,022
20080501 Smp_scaff000331.embl.fixed	21	21	0	0	779,708
20080501 Smp_scaff000194.embl.fixed	21	21	0	0	778,179
20080501 Smp_scaff000094.embl.fixed	25	25	0	0	771,949
20080501 Smp_scaff000328.embl.fixed	23	23	0	0	771,807
20080501 Smp_scaff000139.embl.fixed	17	17	0	0	766,167
20080501 Smp_scaff000150.embl.fixed	20	20	0	0	760,080
20080501 Smp_scaff000435.embl.fixed	17	17	0	0	749,063
20080501 Smp_scaff000249.embl.fixed	13	13	0	0	748,199
20080501 Smp_scaff000092.embl.fixed	30	30	0	0	748,133
20080501 Smp_scaff000250.embl.fixed	17	17	0	0	736,638
20080501 Smp_scaff000423.embl.fixed	26	26	0	0	735,560
20080501 Smp_scaff019021.embl.fixed	19	19	0	0	731,816
20080501 Smp_scaff000248.embl.fixed	20	20	0	0	731,050
20080501 Smp_scaff000113.embl.fixed	27	27	0	0	719,495
20080501 Smp_scaff000095.embl.fixed	18	18	0	0	715,842
20080501 Smp_scaff000332.embl.fixed	18	18	0	0	713,249
20080501 Smp_scaff000325.embl.fixed	35	35	0	0	709,333
20080501 Smp_scaff000235.embl.fixed	20	20	0	0	709,327
20080501 Smp_scaff000327.embl.fixed	32	32	0	0	708,014
20080501 Smp_scaff000433.embl.fixed	18	18	0	0	707,917
20080501 Smp_scaff000233.embl.fixed	12	12	0	0	700,867
20080501 Smp_scaff000145.embl.fixed	26	26	0	0	700,429
20080501 Smp_scaff000421.embl.fixed	28	28	0	0	698,071
20080501 Smp_scaff000138.embl.fixed	20	20	0	0	694,945
20080501 Smp_scaff000191.embl.fixed	21	21	0	0	693,479
20080501 Smp_scaff000185.embl.fixed	27	27	0	0	688,857
20080501 Smp_scaff000180.embl.fixed	20	20	0	0	687,463
20080501 Smp_scaff000085.embl.fixed	16	16	0	0	685,722
20080501 Smp_scaff000190.embl.fixed	16	16	0	0	681,318
20080501 Smp_scaff000091.embl.fixed	25	25	0	0	681,202
20080501 Smp_scaff000184.embl.fixed	19	19	0	0	677,099
20080501 Smp_scaff000329.embl.fixed	23	23	0	0	674,749
20080501 Smp_scaff000228.embl.fixed	18	18	0	0	668,486
20080501 Smp_scaff000066.embl.fixed	18	18	0	0	662,301
20080501 Smp_scaff000137.embl.fixed	18	18	0	0	650,645
20080501 Smp_scaff000245.embl.fixed	19	19	0	0	650,426
20080501 Smp_scaff000252.embl.fixed	15	15	0	0	649,416
20080501 Smp_scaff000242.embl.fixed	17	17	0	0	649,394
20080501 Smp_scaff000067.embl.fixed	32	32	0	0	643,819
20080501 Smp_scaff000243.embl.fixed	14	14	0	0	634,719
20080501 Smp_scaff000147.embl.fixed	21	21	0	0	633,475
20080501 Smp_scaff000054.embl.fixed	18	18	0	0	632,567
20080501 Smp_scaff000427.embl.fixed	19	19	0	0	632,148
20080501 Smp_scaff000237.embl.fixed	22	22	0	0	630,769
20080501 Smp_scaff000292.embl.fixed	33	33	0	0	622,230
20080501 Smp_scaff000430.embl.fixed	21	21	0	0	617,820
20080501 Smp_scaff000143.embl.fixed	18	18	0	0	617,086
20080501 Smp_scaff000178.embl.fixed	23	23	0	0	610,609
20080501 Smp_scaff000112.embl.fixed	20	20	0	0	609,655
20080501 Smp_scaff000425.embl.fixed	14	14	0	0	608,895
20080501 Smp_scaff000086.embl.fixed	17	17	0	0	603,619
20080501 Smp_scaff000135.embl.fixed	25	25	0	0	598,109
20080501 Smp_scaff000217.embl.fixed	24	24	0	0	592,055
20080501 Smp_scaff000177.embl.fixed	15	15	0	0	590,560
20080501 Smp_scaff000240.embl.fixed	15	15	0	0	582,701
20080501 Smp_scaff000623.embl.fixed	23	23	0	0	580,574
20080501 Smp_scaff000431.embl.fixed	19	19	0	0	575,504
20080501 Smp_scaff000082.embl.fixed	28	28	0	0	573,973
20080501 Smp_scaff000417.embl.fixed	14	14	0	0	570,327
20080501 Smp_scaff000220.embl.fixed	20	20	0	0	566,466
20080501 Smp_scaff000187.embl.fixed	24	24	0	0	565,760
20080501 Smp_scaff000218.embl.fixed	17	17	0	0	565,699
20080501 Smp_scaff000109.embl.fixed	15	15	0	0	561,853
20080501 Smp_scaff019022.embl.fixed	13	13	0	0	561,288
20080501 Smp_scaff000330.embl.fixed	19	19	0	0	558,400
20080501 Smp_scaff000219.embl.fixed	17	17	0	0	555,008
20080501 Smp_scaff000320.embl.fixed	22	22	0	0	554,366
20080501 Smp_scaff000107.embl.fixed	24	24	0	0	549,529
20080501 Smp_scaff000410.embl.fixed	14	14	0	0	548,956
20080501 Smp_scaff000416.embl.fixed	20	20	0	0	546,141
20080501 Smp_scaff000052.embl.fixed	23	23	0	0	544,039
20080501 Smp_scaff000051.embl.fixed	32	32	0	0	540,017
20080501 Smp_scaff000183.embl.fixed	17	17	0	0	538,008
20080501 Smp_scaff000105.embl.fixed	15	14	0	1	530,863
20080501 Smp_scaff000426.embl.fixed	12	12	0	0	518,707
20080501 Smp_scaff000087.embl.fixed	16	16	0	0	516,867
20080501 Smp_scaff000411.embl.fixed	17	17	0	0	504,784
20080501 Smp_scaff000428.embl.fixed	21	21	0	0	504,753
20080501 Smp_scaff000110.embl.fixed	27	26	0	1	501,346
20080501 Smp_scaff000080.embl.fixed	12	12	0	0	500,533
20080501 Smp_scaff000323.embl.fixed	14	14	0	0	498,172
20080501 Smp_scaff000434.embl.fixed	13	13	0	0	497,612
20080501 Smp_scaff000065.embl.fixed	15	15	0	0	493,106
20080501 Smp_scaff000088.embl.fixed	16	16	0	0	492,826
20080501 Smp_scaff000407.embl.fixed	14	14	0	0	487,647
20080501 Smp_scaff000406.embl.fixed	20	20	0	0	484,715
20080501 Smp_scaff000221.embl.fixed	23	23	0	0	475,054
20080501 Smp_scaff000108.embl.fixed	20	20	0	0	474,121
20080501 Smp_scaff000213.embl.fixed	22	22	0	0	471,991
20080501 Smp_scaff000617.embl.fixed	13	13	0	0	462,109
20080501 Smp_scaff002003.embl.fixed	13	13	0	0	459,426
20080501 Smp_scaff000422.embl.fixed	13	13	0	0	456,225
20080501 Smp_scaff000432.embl.fixed	15	15	0	0	454,725
20080501 Smp_scaff000171.embl.fixed	14	14	0	0	454,592
20080501 Smp_scaff000176.embl.fixed	18	18	0	0	452,501
20080501 Smp_scaff002000.embl.fixed	18	18	0	0	452,380
20080501 Smp_scaff000396.embl.fixed	13	13	0	0	451,612
20080501 Smp_scaff000419.embl.fixed	14	14	0	0	450,025
20080501 Smp_scaff000186.embl.fixed	15	15	0	0	449,963
20080501 Smp_scaff000310.embl.fixed	14	14	0	0	439,186
20080501 Smp_scaff000238.embl.fixed	18	18	0	0	434,718
20080501 Smp_scaff000399.embl.fixed	18	18	0	0	432,058
20080501 Smp_scaff000170.embl.fixed	22	22	0	0	429,621
20080501 Smp_scaff000420.embl.fixed	17	17	0	0	428,405
20080501 Smp_scaff000322.embl.fixed	13	13	0	0	425,413
20080501 Smp_scaff000223.embl.fixed	13	13	0	0	417,579
20080501 Smp_scaff000297.embl.fixed	13	13	0	0	415,203
20080501 Smp_scaff000299.embl.fixed	26	26	0	0	410,772
20080501 Smp_scaff000222.embl.fixed	17	17	0	0	407,858
20080501 Smp_scaff000394.embl.fixed	12	12	0	0	406,758
20080501 Smp_scaff000402.embl.fixed	13	13	0	0	405,744
20080501 Smp_scaff002004.embl.fixed	17	17	0	0	404,240
20080501 Smp_scaff000173.embl.fixed	18	18	0	0	401,349
20080501 Smp_scaff000081.embl.fixed	12	12	0	0	401,220
20080501 Smp_scaff000169.embl.fixed	19	19	0	0	397,012
20080501 Smp_scaff000104.embl.fixed	16	16	0	0	390,983
20080501 Smp_scaff000308.embl.fixed	17	17	0	0	385,009
20080501 Smp_scaff000418.embl.fixed	17	17	0	0	384,102
20080501 Smp_scaff000312.embl.fixed	21	21	0	0	381,714
20080501 Smp_scaff000388.embl.fixed	15	15	0	0	381,194
20080501 Smp_scaff000614.embl.fixed	12	12	0	0	377,966
20080501 Smp_scaff000174.embl.fixed	19	18	0	1	376,417
20080501 Smp_scaff000610.embl.fixed	24	24	0	0	370,886
20080501 Smp_scaff000079.embl.fixed	14	14	0	0	370,793
20080501 Smp_scaff000148.embl.fixed	14	14	0	0	369,688
20080501 Smp_scaff000609.embl.fixed	13	13	0	0	362,439
20080501 Smp_scaff000612.embl.fixed	13	13	0	0	362,058
20080501 Smp_scaff000408.embl.fixed	13	13	0	0	362,002
20080501 Smp_scaff000316.embl.fixed	13	13	0	0	360,105
20080501 Smp_scaff000315.embl.fixed	12	12	0	0	359,085
20080501 Smp_scaff000590.embl.fixed	14	14	0	0	355,538
20080501 Smp_scaff000215.embl.fixed	12	12	0	0	345,122
20080501 Smp_scaff000621.embl.fixed	15	15	0	0	344,581
20080501 Smp_scaff000294.embl.fixed	16	16	0	0	344,317
20080501 Smp_scaff000591.embl.fixed	12	12	0	0	341,496
20080501 Smp_scaff000424.embl.fixed	17	17	0	0	325,309
20080501 Smp_scaff000132.embl.fixed	13	13	0	0	322,778
20080501 Smp_scaff000589.embl.fixed	17	17	0	0	322,482
20080501 Smp_scaff000409.embl.fixed	13	13	0	0	320,357
20080501 Smp_scaff000307.embl.fixed	13	13	0	0	317,227
20080501 Smp_scaff000306.embl.fixed	12	12	0	0	314,940
20080501 Smp_scaff001990.embl.fixed	12	12	0	0	306,955
20080501 Smp_scaff002006.embl.fixed	13	13	0	0	299,617
20080501 Smp_scaff000600.embl.fixed	13	13	0	0	298,049
20080501 Smp_scaff000585.embl.fixed	12	12	0	0	288,330
20080501 Smp_scaff000211.embl.fixed	19	19	0	0	288,100
20080501 Smp_scaff001989.embl.fixed	12	12	0	0	282,402
20080501 Smp_scaff000295.embl.fixed	19	19	0	0	278,229
20080501 Smp_scaff000593.embl.fixed	14	14	0	0	253,570
20080501 Smp_scaff000212.embl.fixed	13	13	0	0	250,709
20080501 Smp_scaff000362.embl.fixed	15	15	0	0	248,050
20080501 Smp_scaff000376.embl.fixed	13	13	0	0	246,202
20080501 Smp_scaff000208.embl.fixed	13	13	0	0	241,097
20080501 Smp_scaff000570.embl.fixed	12	12	0	0	238,466
20080501 Smp_scaff000381.embl.fixed	13	13	0	0	228,840
20080501 Smp_scaff019006.embl.fixed	12	12	0	0	227,548
20080501 Smp_scaff000372.embl.fixed	12	12	0	0	190,761
20080501 Smp_scaff004457.embl.fixed	21	21	0	0	3,189
18,718 Undisplayed Contigs/Replicons	4,050	4,050	0	1	102,137,725

Total:	13,302	13,292	0	10	381,096,674

Ortholog data available?	No

Database Contents

Genes	13,302
Pathways	142
Enzymatic Reactions	723
Transport Reactions	10
Polypeptides	13,269
Protein Complexes	0
Enzymes	760
Transporters	369
Compounds	576
tRNAs	29

Database Version

29.0

Taxonomic Lineage	cellular organisms Eukaryota Opisthokonta Metazoa Eumetazoa Bilateria Protostomia Spiralia Lophotrochozoa Platyhelminthes Trematoda Digenea <flatworms> Strigeidida Schistosomatoidea Schistosomatidae Schistosoma Schistosoma mansoni
Genetic Code Number	1 -- Standard
GOLD	0003168
NCBI-Taxonomy	6183

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp19: Karp PD, Midford PE, Billington R, Kothari A, Krummenacker M, Latendresse M, Ong WK, Subhraveti P, Caspi R, Fulcher C, Keseler IM, Paley SM (2019). "Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform. PMID: 31813964

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC14.

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