Database Authors
Pallavi Subhraveti1, Peter Midford, Ingrid Keseler1, Anamika Kothari1, Ron Caspi1, Peter D Karp1
1SRI International
Summary This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii W7282, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_AIEH01000001243230103234,552RefSeq:NZ_AIEH01000001
NZ_AIEH0100000219018613208,274RefSeq:NZ_AIEH01000002
NZ_AIEH0100000317416068186,150RefSeq:NZ_AIEH01000003
NZ_AIEH0100000416415554173,202RefSeq:NZ_AIEH01000004
NZ_AIEH0100000515715205164,347RefSeq:NZ_AIEH01000005
NZ_AIEH0100000615514735162,194RefSeq:NZ_AIEH01000006
NZ_AIEH0100000711911009127,833RefSeq:NZ_AIEH01000007
NZ_AIEH0100000812111416124,838RefSeq:NZ_AIEH01000008
NZ_AIEH0100000911511014105,646RefSeq:NZ_AIEH01000009
NZ_AIEH01000010979403102,439RefSeq:NZ_AIEH01000010
NZ_AIEH01000011928309101,687RefSeq:NZ_AIEH01000011
NZ_AIEH0100001290850599,814RefSeq:NZ_AIEH01000012
NZ_AIEH0100001378730584,577RefSeq:NZ_AIEH01000013
NZ_AIEH0100001480702872,157RefSeq:NZ_AIEH01000014
NZ_AIEH0100001560521771,857RefSeq:NZ_AIEH01000015
NZ_AIEH0100001659560370,094RefSeq:NZ_AIEH01000016
NZ_AIEH0100001770634368,473RefSeq:NZ_AIEH01000017
NZ_AIEH0100001875721265,065RefSeq:NZ_AIEH01000018
NZ_AIEH0100001960580264,532RefSeq:NZ_AIEH01000019
NZ_AIEH0100002053503055,135RefSeq:NZ_AIEH01000020
NZ_AIEH0100002145370853,465RefSeq:NZ_AIEH01000021
NZ_AIEH0100002235321243,176RefSeq:NZ_AIEH01000022
NZ_AIEH0100002345400542,670RefSeq:NZ_AIEH01000023
NZ_AIEH0100002431273141,953RefSeq:NZ_AIEH01000024
NZ_AIEH0100002535330241,466RefSeq:NZ_AIEH01000025
NZ_AIEH0100002646401540,474RefSeq:NZ_AIEH01000026
NZ_AIEH0100002742381340,436RefSeq:NZ_AIEH01000027
NZ_AIEH0100002839360340,004RefSeq:NZ_AIEH01000028
NZ_AIEH0100002941372239,942RefSeq:NZ_AIEH01000029
NZ_AIEH0100003032271439,714RefSeq:NZ_AIEH01000030
NZ_AIEH0100003138361139,377RefSeq:NZ_AIEH01000031
NZ_AIEH0100003241380339,163RefSeq:NZ_AIEH01000032
NZ_AIEH0100003350480237,604RefSeq:NZ_AIEH01000033
NZ_AIEH0100003436360035,775RefSeq:NZ_AIEH01000034
NZ_AIEH0100003535304134,591RefSeq:NZ_AIEH01000035
NZ_AIEH0100003628261133,535RefSeq:NZ_AIEH01000036
NZ_AIEH0100003732290333,424RefSeq:NZ_AIEH01000037
NZ_AIEH0100003834310332,455RefSeq:NZ_AIEH01000038
NZ_AIEH0100003927250230,731RefSeq:NZ_AIEH01000039
NZ_AIEH0100004029280130,276RefSeq:NZ_AIEH01000040
NZ_AIEH0100004124203128,449RefSeq:NZ_AIEH01000041
NZ_AIEH0100004229233328,437RefSeq:NZ_AIEH01000042
NZ_AIEH0100004336360028,220RefSeq:NZ_AIEH01000043
NZ_AIEH0100004428250327,859RefSeq:NZ_AIEH01000044
NZ_AIEH0100004530282027,429RefSeq:NZ_AIEH01000045
NZ_AIEH0100004625241027,418RefSeq:NZ_AIEH01000046
NZ_AIEH0100004725190626,291RefSeq:NZ_AIEH01000047
NZ_AIEH0100004825220325,920RefSeq:NZ_AIEH01000048
NZ_AIEH0100004926210524,442RefSeq:NZ_AIEH01000049
NZ_AIEH0100005020150524,208RefSeq:NZ_AIEH01000050
NZ_AIEH0100005124200424,095RefSeq:NZ_AIEH01000051
NZ_AIEH0100005226240223,736RefSeq:NZ_AIEH01000052
NZ_AIEH0100005323210222,548RefSeq:NZ_AIEH01000053
NZ_AIEH0100005415130222,478RefSeq:NZ_AIEH01000054
NZ_AIEH0100005520170321,756RefSeq:NZ_AIEH01000055
NZ_AIEH0100005626200621,343RefSeq:NZ_AIEH01000056
NZ_AIEH0100005723200321,212RefSeq:NZ_AIEH01000057
NZ_AIEH0100005818160220,506RefSeq:NZ_AIEH01000058
NZ_AIEH0100005918140419,875RefSeq:NZ_AIEH01000059
NZ_AIEH0100006022162419,765RefSeq:NZ_AIEH01000060
NZ_AIEH010000611480618,343RefSeq:NZ_AIEH01000061
NZ_AIEH0100006223160718,093RefSeq:NZ_AIEH01000062
NZ_AIEH0100006323192217,997RefSeq:NZ_AIEH01000063
NZ_AIEH0100006416130316,188RefSeq:NZ_AIEH01000064
NZ_AIEH0100006516150115,860RefSeq:NZ_AIEH01000065
NZ_AIEH0100006613120115,398RefSeq:NZ_AIEH01000066
NZ_AIEH0100006717130415,186RefSeq:NZ_AIEH01000067
NZ_AIEH0100006826241115,120RefSeq:NZ_AIEH01000068
NZ_AIEH0100006925230214,639RefSeq:NZ_AIEH01000069
NZ_AIEH0100007014110314,607RefSeq:NZ_AIEH01000070
NZ_AIEH0100007118151214,553RefSeq:NZ_AIEH01000071
NZ_AIEH0100007312100210,779RefSeq:NZ_AIEH01000073
61 Undisplayed Contigs/Replicons130123772165,339
Total:3,8953,510753103,951,186
Ortholog data available?Yes
Database Contents
Genes3,893
Pathways251
Enzymatic Reactions1,256
Transport Reactions103
Polypeptides3,551
Protein Complexes52
Enzymes765
Transporters345
Compounds1,032
Transcription Units2,740
tRNAs60
GO Terms2,141
Database Version29.0
Synonyms Acinetobacter baumannii str. W7282
Acinetobacter baumannii strain W7282
Acinetobacter baumannii W7282
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Gammaproteobacteria
Moraxellales
Moraxellaceae
Acinetobacter
Acinetobacter calcoaceticus/baumannii complex
Acinetobacter baumannii
Acinetobacter baumannii W7282
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN02471607
NCBI BioProjectPRJNA224116
NCBI-Taxonomy981329
Geographic LocationUnited Kingdom
Annotation ProviderNCBI
Annotation Date2017-11-23
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version4.3
Annotation CommentBest-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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