Summary of Acinetobacter baumannii AB_2007-09-110-01-7, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii AB_2007-09-110-01-7, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AMHH01000216	128	121	5	2	136,147	RefSeq:NZ_AMHH01000216
NZ_AMHH01000062	132	123	5	4	132,927	RefSeq:NZ_AMHH01000062
NZ_AMHH01000253	81	78	2	1	102,113	RefSeq:NZ_AMHH01000253
NZ_AMHH01000056	93	89	4	0	99,888	RefSeq:NZ_AMHH01000056
NZ_AMHH01000080	95	92	0	3	94,999	RefSeq:NZ_AMHH01000080
NZ_AMHH01000222	83	80	0	3	89,285	RefSeq:NZ_AMHH01000222
NZ_AMHH01000213	82	76	1	5	74,506	RefSeq:NZ_AMHH01000213
NZ_AMHH01000067	71	64	2	5	69,609	RefSeq:NZ_AMHH01000067
NZ_AMHH01000244	61	60	0	1	67,880	RefSeq:NZ_AMHH01000244
NZ_AMHH01000257	64	56	0	8	66,476	RefSeq:NZ_AMHH01000257
NZ_AMHH01000256	58	55	0	3	65,136	RefSeq:NZ_AMHH01000256
NZ_AMHH01000267	63	61	0	2	60,573	RefSeq:NZ_AMHH01000267
NZ_AMHH01000022	56	51	0	5	58,754	RefSeq:NZ_AMHH01000022
NZ_AMHH01000089	53	50	1	2	54,930	RefSeq:NZ_AMHH01000089
NZ_AMHH01000016	54	50	1	3	53,823	RefSeq:NZ_AMHH01000016
NZ_AMHH01000156	43	43	0	0	53,568	RefSeq:NZ_AMHH01000156
NZ_AMHH01000073	47	44	0	3	52,447	RefSeq:NZ_AMHH01000073
NZ_AMHH01000008	48	46	1	1	52,010	RefSeq:NZ_AMHH01000008
NZ_AMHH01000269	47	45	0	2	49,576	RefSeq:NZ_AMHH01000269
NZ_AMHH01000224	50	50	0	0	48,081	RefSeq:NZ_AMHH01000224
NZ_AMHH01000240	39	36	0	3	43,188	RefSeq:NZ_AMHH01000240
NZ_AMHH01000268	57	56	0	1	43,142	RefSeq:NZ_AMHH01000268
NZ_AMHH01000012	42	37	3	2	41,530	RefSeq:NZ_AMHH01000012
NZ_AMHH01000252	38	37	0	1	41,471	RefSeq:NZ_AMHH01000252
NZ_AMHH01000189	36	33	0	3	38,457	RefSeq:NZ_AMHH01000189
NZ_AMHH01000254	34	33	0	1	37,700	RefSeq:NZ_AMHH01000254
NZ_AMHH01000173	54	51	1	2	37,293	RefSeq:NZ_AMHH01000173
NZ_AMHH01000245	50	49	0	1	37,050	RefSeq:NZ_AMHH01000245
NZ_AMHH01000032	33	30	1	2	36,404	RefSeq:NZ_AMHH01000032
NZ_AMHH01000274	24	24	0	0	36,058	RefSeq:NZ_AMHH01000274
NZ_AMHH01000219	41	38	3	0	35,178	RefSeq:NZ_AMHH01000219
NZ_AMHH01000101	35	34	0	1	34,844	RefSeq:NZ_AMHH01000101
NZ_AMHH01000225	25	24	0	1	34,439	RefSeq:NZ_AMHH01000225
NZ_AMHH01000230	35	34	0	1	34,327	RefSeq:NZ_AMHH01000230
NZ_AMHH01000193	31	29	0	2	33,350	RefSeq:NZ_AMHH01000193
NZ_AMHH01000232	31	27	3	1	30,011	RefSeq:NZ_AMHH01000232
NZ_AMHH01000020	29	29	0	0	29,592	RefSeq:NZ_AMHH01000020
NZ_AMHH01000237	29	28	0	1	29,577	RefSeq:NZ_AMHH01000237
NZ_AMHH01000206	27	24	0	3	29,329	RefSeq:NZ_AMHH01000206
NZ_AMHH01000086	23	20	2	1	28,162	RefSeq:NZ_AMHH01000086
NZ_AMHH01000019	20	18	0	2	27,833	RefSeq:NZ_AMHH01000019
NZ_AMHH01000227	24	23	0	1	27,621	RefSeq:NZ_AMHH01000227
NZ_AMHH01000026	27	25	0	2	27,580	RefSeq:NZ_AMHH01000026
NZ_AMHH01000183	32	30	1	1	27,517	RefSeq:NZ_AMHH01000183
NZ_AMHH01000041	25	25	0	0	27,410	RefSeq:NZ_AMHH01000041
NZ_AMHH01000005	26	25	0	1	27,316	RefSeq:NZ_AMHH01000005
NZ_AMHH01000260	26	22	0	4	27,280	RefSeq:NZ_AMHH01000260
NZ_AMHH01000236	24	23	1	0	26,630	RefSeq:NZ_AMHH01000236
NZ_AMHH01000013	27	24	0	3	26,526	RefSeq:NZ_AMHH01000013
NZ_AMHH01000010	22	21	0	1	26,268	RefSeq:NZ_AMHH01000010
NZ_AMHH01000150	27	24	1	2	26,200	RefSeq:NZ_AMHH01000150
NZ_AMHH01000234	28	26	0	2	25,566	RefSeq:NZ_AMHH01000234
NZ_AMHH01000239	21	21	0	0	24,643	RefSeq:NZ_AMHH01000239
NZ_AMHH01000058	22	20	0	2	24,594	RefSeq:NZ_AMHH01000058
NZ_AMHH01000113	23	21	0	2	24,552	RefSeq:NZ_AMHH01000113
NZ_AMHH01000243	22	21	0	1	24,115	RefSeq:NZ_AMHH01000243
NZ_AMHH01000028	24	22	1	1	24,050	RefSeq:NZ_AMHH01000028
NZ_AMHH01000265	21	19	0	2	24,021	RefSeq:NZ_AMHH01000265
NZ_AMHH01000208	19	18	0	1	23,488	RefSeq:NZ_AMHH01000208
NZ_AMHH01000015	26	25	0	1	23,268	RefSeq:NZ_AMHH01000015
NZ_AMHH01000273	28	22	4	2	23,056	RefSeq:NZ_AMHH01000273
NZ_AMHH01000002	21	19	0	2	23,004	RefSeq:NZ_AMHH01000002
NZ_AMHH01000090	23	23	0	0	22,959	RefSeq:NZ_AMHH01000090
NZ_AMHH01000027	27	24	0	3	22,756	RefSeq:NZ_AMHH01000027
NZ_AMHH01000218	22	20	0	2	22,359	RefSeq:NZ_AMHH01000218
NZ_AMHH01000057	25	22	0	3	22,036	RefSeq:NZ_AMHH01000057
NZ_AMHH01000036	19	18	0	1	21,595	RefSeq:NZ_AMHH01000036
NZ_AMHH01000075	21	20	0	1	20,882	RefSeq:NZ_AMHH01000075
NZ_AMHH01000250	15	14	0	1	20,838	RefSeq:NZ_AMHH01000250
NZ_AMHH01000251	22	20	1	1	20,772	RefSeq:NZ_AMHH01000251
NZ_AMHH01000255	22	21	0	1	20,751	RefSeq:NZ_AMHH01000255
NZ_AMHH01000046	19	17	1	1	20,455	RefSeq:NZ_AMHH01000046
NZ_AMHH01000233	21	20	1	0	20,430	RefSeq:NZ_AMHH01000233
NZ_AMHH01000198	22	20	0	2	20,347	RefSeq:NZ_AMHH01000198
NZ_AMHH01000043	20	18	0	2	20,129	RefSeq:NZ_AMHH01000043
NZ_AMHH01000065	14	14	0	0	19,946	RefSeq:NZ_AMHH01000065
NZ_AMHH01000235	21	21	0	0	19,860	RefSeq:NZ_AMHH01000235
NZ_AMHH01000066	18	16	0	2	18,733	RefSeq:NZ_AMHH01000066
NZ_AMHH01000217	15	14	0	1	18,708	RefSeq:NZ_AMHH01000217
NZ_AMHH01000154	19	17	0	2	17,986	RefSeq:NZ_AMHH01000154
NZ_AMHH01000210	21	20	0	1	17,933	RefSeq:NZ_AMHH01000210
NZ_AMHH01000212	22	20	0	2	17,669	RefSeq:NZ_AMHH01000212
NZ_AMHH01000025	14	5	0	9	17,668	RefSeq:NZ_AMHH01000025
NZ_AMHH01000261	14	12	0	2	17,497	RefSeq:NZ_AMHH01000261
NZ_AMHH01000248	12	11	0	1	17,390	RefSeq:NZ_AMHH01000248
NZ_AMHH01000006	17	16	0	1	16,707	RefSeq:NZ_AMHH01000006
NZ_AMHH01000259	14	13	0	1	15,300	RefSeq:NZ_AMHH01000259
NZ_AMHH01000007	17	15	0	2	14,896	RefSeq:NZ_AMHH01000007
NZ_AMHH01000047	12	11	0	1	14,871	RefSeq:NZ_AMHH01000047
NZ_AMHH01000070	17	17	0	0	14,731	RefSeq:NZ_AMHH01000070
NZ_AMHH01000172	14	10	0	4	14,005	RefSeq:NZ_AMHH01000172
NZ_AMHH01000037	13	12	0	1	13,849	RefSeq:NZ_AMHH01000037
NZ_AMHH01000084	13	12	0	1	13,456	RefSeq:NZ_AMHH01000084
NZ_AMHH01000096	13	10	0	3	13,182	RefSeq:NZ_AMHH01000096
NZ_AMHH01000258	12	12	0	0	13,156	RefSeq:NZ_AMHH01000258
NZ_AMHH01000064	15	15	0	0	13,101	RefSeq:NZ_AMHH01000064
NZ_AMHH01000131	13	12	0	1	13,016	RefSeq:NZ_AMHH01000131
NZ_AMHH01000192	11	11	0	0	12,797	RefSeq:NZ_AMHH01000192
NZ_AMHH01000009	12	9	0	3	12,468	RefSeq:NZ_AMHH01000009
NZ_AMHH01000093	12	7	4	1	12,069	RefSeq:NZ_AMHH01000093
NZ_AMHH01000102	14	13	1	0	11,901	RefSeq:NZ_AMHH01000102
NZ_AMHH01000051	10	9	0	1	10,260	RefSeq:NZ_AMHH01000051
NZ_AMHH01000143	12	8	0	4	9,516	RefSeq:NZ_AMHH01000143
NZ_AMHH01000127	12	10	1	1	8,942	RefSeq:NZ_AMHH01000127
NZ_AMHH01000095	13	13	0	0	8,465	RefSeq:NZ_AMHH01000095
NZ_AMHH01000226	14	13	1	0	8,459	RefSeq:NZ_AMHH01000226
168 Undisplayed Contigs/Replicons	356	347	9	141	484,635

Total:	3,882	3,503	62	317	3,965,849

Ortholog data available?	Yes

Database Contents

Genes	3,882
Pathways	273
Enzymatic Reactions	1,296
Transport Reactions	110
Polypeptides	3,530
Protein Complexes	55
Enzymes	762
Transporters	339
Compounds	1,051
Transcription Units	2,743
tRNAs	53
GO Terms	1,028

Database Version

29.0

Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus/baumannii complex Acinetobacter baumannii Acinetobacter baumannii AB_2007-09-110-01-7
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02471248
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	1221252
Environment	hospital surface
Annotation Provider	NCBI
Annotation Date	2017-11-23
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	4.3
Annotation Comment	Best-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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