Summary of Acinetobacter baumannii AB_1766

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii AB_1766_8, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AMJO01000148	133	128	3	2	149,543	RefSeq:NZ_AMJO01000148
NZ_AMJO01000196	118	110	5	3	127,642	RefSeq:NZ_AMJO01000196
NZ_AMJO01000135	109	108	0	1	112,580	RefSeq:NZ_AMJO01000135
NZ_AMJO01000191	121	119	1	1	110,987	RefSeq:NZ_AMJO01000191
NZ_AMJO01000141	99	96	0	3	105,746	RefSeq:NZ_AMJO01000141
NZ_AMJO01000163	106	101	3	2	103,147	RefSeq:NZ_AMJO01000163
NZ_AMJO01000087	94	94	0	0	100,290	RefSeq:NZ_AMJO01000087
NZ_AMJO01000007	71	70	0	1	83,320	RefSeq:NZ_AMJO01000007
NZ_AMJO01000099	92	90	0	2	81,905	RefSeq:NZ_AMJO01000099
NZ_AMJO01000129	74	72	0	2	77,185	RefSeq:NZ_AMJO01000129
NZ_AMJO01000158	67	66	0	1	76,088	RefSeq:NZ_AMJO01000158
NZ_AMJO01000150	69	68	0	1	74,376	RefSeq:NZ_AMJO01000150
NZ_AMJO01000155	62	62	0	0	70,857	RefSeq:NZ_AMJO01000155
NZ_AMJO01000159	60	58	0	2	69,631	RefSeq:NZ_AMJO01000159
NZ_AMJO01000012	77	76	0	1	68,595	RefSeq:NZ_AMJO01000012
NZ_AMJO01000111	58	55	0	3	65,193	RefSeq:NZ_AMJO01000111
NZ_AMJO01000161	45	44	1	0	56,412	RefSeq:NZ_AMJO01000161
NZ_AMJO01000023	47	43	0	4	54,167	RefSeq:NZ_AMJO01000023
NZ_AMJO01000152	50	47	3	0	53,206	RefSeq:NZ_AMJO01000152
NZ_AMJO01000149	50	48	0	2	53,201	RefSeq:NZ_AMJO01000149
NZ_AMJO01000095	48	44	3	1	53,188	RefSeq:NZ_AMJO01000095
NZ_AMJO01000197	61	56	2	3	52,475	RefSeq:NZ_AMJO01000197
NZ_AMJO01000028	52	50	0	2	49,201	RefSeq:NZ_AMJO01000028
NZ_AMJO01000203	58	58	0	0	49,054	RefSeq:NZ_AMJO01000203
NZ_AMJO01000215	54	52	1	1	48,295	RefSeq:NZ_AMJO01000215
NZ_AMJO01000195	46	45	0	1	47,218	RefSeq:NZ_AMJO01000195
NZ_AMJO01000085	51	49	0	2	47,166	RefSeq:NZ_AMJO01000085
NZ_AMJO01000042	38	36	0	2	46,269	RefSeq:NZ_AMJO01000042
NZ_AMJO01000006	46	45	0	1	44,069	RefSeq:NZ_AMJO01000006
NZ_AMJO01000176	38	38	0	0	43,201	RefSeq:NZ_AMJO01000176
NZ_AMJO01000182	34	32	0	2	42,992	RefSeq:NZ_AMJO01000182
NZ_AMJO01000110	41	41	0	0	42,270	RefSeq:NZ_AMJO01000110
NZ_AMJO01000118	35	35	0	0	38,739	RefSeq:NZ_AMJO01000118
NZ_AMJO01000026	36	35	0	1	37,267	RefSeq:NZ_AMJO01000026
NZ_AMJO01000146	33	32	0	1	37,144	RefSeq:NZ_AMJO01000146
NZ_AMJO01000031	39	35	4	0	36,961	RefSeq:NZ_AMJO01000031
NZ_AMJO01000175	35	34	0	1	36,634	RefSeq:NZ_AMJO01000175
NZ_AMJO01000132	37	34	3	0	36,199	RefSeq:NZ_AMJO01000132
NZ_AMJO01000181	36	34	0	2	34,241	RefSeq:NZ_AMJO01000181
NZ_AMJO01000014	47	46	0	1	33,916	RefSeq:NZ_AMJO01000014
NZ_AMJO01000222	32	32	0	0	33,630	RefSeq:NZ_AMJO01000222
NZ_AMJO01000166	30	30	0	0	33,429	RefSeq:NZ_AMJO01000166
NZ_AMJO01000154	24	24	0	0	31,865	RefSeq:NZ_AMJO01000154
NZ_AMJO01000180	29	29	0	0	31,814	RefSeq:NZ_AMJO01000180
NZ_AMJO01000004	31	31	0	0	31,466	RefSeq:NZ_AMJO01000004
NZ_AMJO01000068	29	29	0	0	30,406	RefSeq:NZ_AMJO01000068
NZ_AMJO01000200	32	31	0	1	30,285	RefSeq:NZ_AMJO01000200
NZ_AMJO01000114	28	25	3	0	29,935	RefSeq:NZ_AMJO01000114
NZ_AMJO01000218	30	29	0	1	29,813	RefSeq:NZ_AMJO01000218
NZ_AMJO01000213	32	31	0	1	29,090	RefSeq:NZ_AMJO01000213
NZ_AMJO01000211	24	23	0	1	26,980	RefSeq:NZ_AMJO01000211
NZ_AMJO01000169	29	27	1	1	26,717	RefSeq:NZ_AMJO01000169
NZ_AMJO01000177	28	28	0	0	26,659	RefSeq:NZ_AMJO01000177
NZ_AMJO01000189	25	25	0	0	26,546	RefSeq:NZ_AMJO01000189
NZ_AMJO01000056	22	21	0	1	26,380	RefSeq:NZ_AMJO01000056
NZ_AMJO01000051	24	23	0	1	26,328	RefSeq:NZ_AMJO01000051
NZ_AMJO01000207	35	32	2	1	25,674	RefSeq:NZ_AMJO01000207
NZ_AMJO01000055	24	24	0	0	25,493	RefSeq:NZ_AMJO01000055
NZ_AMJO01000001	20	20	0	0	25,017	RefSeq:NZ_AMJO01000001
NZ_AMJO01000124	23	22	0	1	24,267	RefSeq:NZ_AMJO01000124
NZ_AMJO01000002	26	24	1	1	23,942	RefSeq:NZ_AMJO01000002
NZ_AMJO01000209	27	25	1	1	23,825	RefSeq:NZ_AMJO01000209
NZ_AMJO01000034	24	24	0	0	23,754	RefSeq:NZ_AMJO01000034
NZ_AMJO01000035	19	18	0	1	23,443	RefSeq:NZ_AMJO01000035
NZ_AMJO01000015	21	20	0	1	23,370	RefSeq:NZ_AMJO01000015
NZ_AMJO01000076	22	21	0	1	23,014	RefSeq:NZ_AMJO01000076
NZ_AMJO01000156	14	14	0	0	19,780	RefSeq:NZ_AMJO01000156
NZ_AMJO01000019	21	21	0	0	18,553	RefSeq:NZ_AMJO01000019
NZ_AMJO01000059	16	15	1	0	18,410	RefSeq:NZ_AMJO01000059
NZ_AMJO01000214	14	13	0	1	18,046	RefSeq:NZ_AMJO01000214
NZ_AMJO01000010	17	15	0	2	17,891	RefSeq:NZ_AMJO01000010
NZ_AMJO01000220	18	18	0	0	17,180	RefSeq:NZ_AMJO01000220
NZ_AMJO01000016	13	12	1	0	16,386	RefSeq:NZ_AMJO01000016
NZ_AMJO01000208	17	14	3	0	15,991	RefSeq:NZ_AMJO01000208
NZ_AMJO01000187	17	16	0	1	15,973	RefSeq:NZ_AMJO01000187
NZ_AMJO01000206	15	13	0	2	15,901	RefSeq:NZ_AMJO01000206
NZ_AMJO01000174	16	13	1	2	15,814	RefSeq:NZ_AMJO01000174
NZ_AMJO01000186	16	16	0	0	14,514	RefSeq:NZ_AMJO01000186
NZ_AMJO01000139	10	10	0	0	14,265	RefSeq:NZ_AMJO01000139
NZ_AMJO01000183	12	11	0	1	13,985	RefSeq:NZ_AMJO01000183
NZ_AMJO01000101	14	9	4	1	13,663	RefSeq:NZ_AMJO01000101
NZ_AMJO01000193	12	12	0	0	13,297	RefSeq:NZ_AMJO01000193
NZ_AMJO01000173	12	11	0	1	13,236	RefSeq:NZ_AMJO01000173
NZ_AMJO01000077	13	12	0	1	12,577	RefSeq:NZ_AMJO01000077
NZ_AMJO01000188	12	12	0	0	12,479	RefSeq:NZ_AMJO01000188
NZ_AMJO01000009	15	12	0	3	10,908	RefSeq:NZ_AMJO01000009
NZ_AMJO01000108	12	9	0	3	10,581	RefSeq:NZ_AMJO01000108
NZ_AMJO01000065	17	16	0	1	8,770	RefSeq:NZ_AMJO01000065
NZ_AMJO01000221	13	13	0	0	7,292	RefSeq:NZ_AMJO01000221
133 Undisplayed Contigs/Replicons	317	308	11	78	411,331

Total:	3,890	3,669	58	163	4,010,535

Ortholog data available?	Yes

Database Contents

Genes	3,888
Pathways	257
Enzymatic Reactions	1,289
Transport Reactions	112
Polypeptides	3,736
Protein Complexes	53
Enzymes	800
Transporters	363
Compounds	1,056
Transcription Units	2,767
tRNAs	50
GO Terms	2,376

Database Version

29.0

Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus/baumannii complex Acinetobacter baumannii Acinetobacter baumannii AB_1766_8
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02471246
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	1221251
Environment	blood
Host	Homo sapiens
Annotation Provider	NCBI
Annotation Date	2017-11-23
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	4.3
Annotation Comment	Best-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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