Summary of Acinetobacter tianfuensis WCHAc060012, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 08-Apr-2022 from the annotated genome of Acinetobacter tianfuensis WCHAc060012, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 26.0) [Karp16, Karp11] using MetaCyc version 26.0 [Caspi20]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutes of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_RAXV01000001	283	264	16	3	304,086	RefSeq:NZ_RAXV01000001
NZ_RAXV01000002	201	196	1	4	209,060	RefSeq:NZ_RAXV01000002
NZ_RAXV01000003	115	111	0	4	119,641	RefSeq:NZ_RAXV01000003
NZ_RAXV01000004	106	99	6	1	112,322	RefSeq:NZ_RAXV01000004
NZ_RAXV01000005	98	97	0	1	109,910	RefSeq:NZ_RAXV01000005
NZ_RAXV01000006	122	120	0	2	103,944	RefSeq:NZ_RAXV01000006
NZ_RAXV01000007	98	91	6	1	102,063	RefSeq:NZ_RAXV01000007
NZ_RAXV01000008	86	84	1	1	98,917	RefSeq:NZ_RAXV01000008
NZ_RAXV01000009	86	81	4	1	92,478	RefSeq:NZ_RAXV01000009
NZ_RAXV01000010	102	96	4	2	89,018	RefSeq:NZ_RAXV01000010
NZ_RAXV01000011	84	81	0	3	81,925	RefSeq:NZ_RAXV01000011
NZ_RAXV01000012	70	69	0	1	81,378	RefSeq:NZ_RAXV01000012
NZ_RAXV01000013	83	83	0	0	81,205	RefSeq:NZ_RAXV01000013
NZ_RAXV01000014	76	72	0	4	80,433	RefSeq:NZ_RAXV01000014
NZ_RAXV01000015	98	96	1	1	77,978	RefSeq:NZ_RAXV01000015
NZ_RAXV01000016	62	60	1	1	77,395	RefSeq:NZ_RAXV01000016
NZ_RAXV01000017	59	58	0	1	75,271	RefSeq:NZ_RAXV01000017
NZ_RAXV01000018	74	73	0	1	74,473	RefSeq:NZ_RAXV01000018
NZ_RAXV01000019	77	73	0	4	72,096	RefSeq:NZ_RAXV01000019
NZ_RAXV01000020	56	54	0	2	66,244	RefSeq:NZ_RAXV01000020
NZ_RAXV01000021	68	62	2	4	65,450	RefSeq:NZ_RAXV01000021
NZ_RAXV01000022	50	48	0	2	64,471	RefSeq:NZ_RAXV01000022
NZ_RAXV01000023	64	64	0	0	61,253	RefSeq:NZ_RAXV01000023
NZ_RAXV01000024	68	65	1	2	59,163	RefSeq:NZ_RAXV01000024
NZ_RAXV01000025	57	46	9	2	57,072	RefSeq:NZ_RAXV01000025
NZ_RAXV01000026	51	51	0	0	55,434	RefSeq:NZ_RAXV01000026
NZ_RAXV01000027	50	48	1	1	54,834	RefSeq:NZ_RAXV01000027
NZ_RAXV01000028	52	51	0	1	53,984	RefSeq:NZ_RAXV01000028
NZ_RAXV01000029	57	55	0	2	49,395	RefSeq:NZ_RAXV01000029
NZ_RAXV01000030	34	33	0	1	48,554	RefSeq:NZ_RAXV01000030
NZ_RAXV01000031	44	43	0	1	47,616	RefSeq:NZ_RAXV01000031
NZ_RAXV01000032	49	43	4	2	45,224	RefSeq:NZ_RAXV01000032
NZ_RAXV01000033	44	43	0	1	44,831	RefSeq:NZ_RAXV01000033
NZ_RAXV01000034	41	38	3	0	43,784	RefSeq:NZ_RAXV01000034
NZ_RAXV01000035	41	40	1	0	42,424	RefSeq:NZ_RAXV01000035
NZ_RAXV01000036	36	35	0	1	40,263	RefSeq:NZ_RAXV01000036
NZ_RAXV01000037	39	38	0	1	37,636	RefSeq:NZ_RAXV01000037
NZ_RAXV01000038	31	30	1	0	35,957	RefSeq:NZ_RAXV01000038
NZ_RAXV01000039	30	30	0	0	29,739	RefSeq:NZ_RAXV01000039
NZ_RAXV01000040	28	22	4	2	26,997	RefSeq:NZ_RAXV01000040
NZ_RAXV01000041	28	27	0	1	23,205	RefSeq:NZ_RAXV01000041
NZ_RAXV01000042	23	22	0	1	21,347	RefSeq:NZ_RAXV01000042
NZ_RAXV01000043	25	23	0	2	21,031	RefSeq:NZ_RAXV01000043
NZ_RAXV01000044	25	24	0	1	21,009	RefSeq:NZ_RAXV01000044
NZ_RAXV01000045	21	20	1	0	20,236	RefSeq:NZ_RAXV01000045
NZ_RAXV01000046	12	10	1	1	18,297	RefSeq:NZ_RAXV01000046
NZ_RAXV01000047	19	19	0	0	17,110	RefSeq:NZ_RAXV01000047
NZ_RAXV01000048	21	20	0	1	17,090	RefSeq:NZ_RAXV01000048
NZ_RAXV01000049	12	12	0	0	16,312	RefSeq:NZ_RAXV01000049
NZ_RAXV01000050	17	17	0	0	15,861	RefSeq:NZ_RAXV01000050
NZ_RAXV01000051	13	12	1	0	13,008	RefSeq:NZ_RAXV01000051
NZ_RAXV01000052	13	12	0	1	10,536	RefSeq:NZ_RAXV01000052
64 Undisplayed Contigs/Replicons	156	149	8	15	175,958

Total:	3,371	3,210	77	84	3,464,918

Ortholog data available?	Yes

Database Contents

Genes	3,370
Pathways	255
Enzymatic Reactions	1,288
Transport Reactions	57
Polypeptides	3,271
Protein Complexes	6
Enzymes	747
Transporters	306
Compounds	943
Transcription Units	2,358
tRNAs	70
Protein Features	3,734
GO Terms	222

Database Version

29.0

Sequence Source	GCF_003611465.1
Synonyms	Acinetobacter sp. WCHAc060012
Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter tianfuensis
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN09842372
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	2419603
Environment	Sewage
Geographic Location	China
Collection Date	2018
Annotation Provider	NCBI RefSeq
Annotation Date	2021-11-8
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version	5.3
Annotation Comment	Best-placed reference protein set; GeneMarkS-2+
NCBI Genome Type	representative

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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