Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [1, 2] component of Pathway Tools software version 28.5 and MetaCyc [3] version 28.1 on 20-Sep-2024 10:11:11.
Genome
RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NC_0094843,1863,09358353,389,227NCBI Assembly:GCF_000016725.1
pACRY01200167033203,589NCBI Assembly:GCF_000016725.1
pACRY02194177017187,422NCBI Assembly:GCF_000016725.1
pACRY0387840388,953NCBI Assembly:GCF_000016725.1
pACRY0440380237,415NCBI Assembly:GCF_000016725.1
pACRY0531270437,155NCBI Assembly:GCF_000016725.1
pACRY061111008,781NCBI Assembly:GCF_000016725.1
pACRY0799005,629NCBI Assembly:GCF_000016725.1
pACRY0877004,909NCBI Assembly:GCF_000016725.1
Total:3,7653,61358943,963,080
Ortholog data available?No
Database Contents
Genes3,765
Pathways304
Enzymatic Reactions1,647
Transport Reactions54
Polypeptides3,613
Protein Complexes127
Enzymes844
Transporters301
Compounds1,458
Transcription Units2,241
tRNAs48
Protein Features1,105
GO Terms4,585
Database Version29.0
Sequence SourceGCF_000016725.1
Synonyms Acidiphilium cryptum strain JF-5
Acidiphilium cryptum str. JF-5
Acidiphilum cryptum JF-5
Acidiphilium cryptum JF-5
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Alphaproteobacteria
Rhodospirillales
Acetobacteraceae
Acidiphilium
Acidiphilium cryptum
Acidiphilium cryptum JF-5
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN02598339
NCBI BioProjectPRJNA224116
NCBI-Taxonomy349163
Annotation ProviderNCBI RefSeq
Annotation Date2024-02-9
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version6.6
Annotation CommentBest-placed reference protein set; GeneMarkS-2+


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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC17A.