Summary of Acinetobacter baumannii AB

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii AB_1649-8, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AMHF01000092	156	146	7	3	155,477	RefSeq:NZ_AMHF01000092
NZ_AMHF01000057	142	139	1	2	149,603	RefSeq:NZ_AMHF01000057
NZ_AMHF01000047	129	121	4	4	140,035	RefSeq:NZ_AMHF01000047
NZ_AMHF01000071	112	112	0	0	113,585	RefSeq:NZ_AMHF01000071
NZ_AMHF01000067	102	102	0	0	113,021	RefSeq:NZ_AMHF01000067
NZ_AMHF01000072	90	89	0	1	103,955	RefSeq:NZ_AMHF01000072
NZ_AMHF01000126	100	95	3	2	98,951	RefSeq:NZ_AMHF01000126
NZ_AMHF01000087	74	73	1	0	94,362	RefSeq:NZ_AMHF01000087
NZ_AMHF01000086	80	77	0	3	93,301	RefSeq:NZ_AMHF01000086
NZ_AMHF01000066	87	85	0	2	90,925	RefSeq:NZ_AMHF01000066
NZ_AMHF01000009	82	80	0	2	85,470	RefSeq:NZ_AMHF01000009
NZ_AMHF01000060	69	69	0	0	81,999	RefSeq:NZ_AMHF01000060
NZ_AMHF01000029	80	70	0	10	77,791	RefSeq:NZ_AMHF01000029
NZ_AMHF01000070	98	96	0	2	76,766	RefSeq:NZ_AMHF01000070
NZ_AMHF01000018	63	62	0	1	75,339	RefSeq:NZ_AMHF01000018
NZ_AMHF01000027	64	62	0	2	69,478	RefSeq:NZ_AMHF01000027
NZ_AMHF01000121	57	55	0	2	68,329	RefSeq:NZ_AMHF01000121
NZ_AMHF01000081	59	58	0	1	64,248	RefSeq:NZ_AMHF01000081
NZ_AMHF01000058	52	52	0	0	55,738	RefSeq:NZ_AMHF01000058
NZ_AMHF01000103	55	52	0	3	55,649	RefSeq:NZ_AMHF01000103
NZ_AMHF01000100	60	55	3	2	54,971	RefSeq:NZ_AMHF01000100
NZ_AMHF01000083	56	50	0	6	54,638	RefSeq:NZ_AMHF01000083
NZ_AMHF01000053	53	52	0	1	53,869	RefSeq:NZ_AMHF01000053
NZ_AMHF01000093	55	54	0	1	53,848	RefSeq:NZ_AMHF01000093
NZ_AMHF01000050	56	53	0	3	53,807	RefSeq:NZ_AMHF01000050
NZ_AMHF01000138	52	50	0	2	52,780	RefSeq:NZ_AMHF01000138
NZ_AMHF01000076	54	53	1	0	50,329	RefSeq:NZ_AMHF01000076
NZ_AMHF01000102	44	42	2	0	47,561	RefSeq:NZ_AMHF01000102
NZ_AMHF01000095	49	46	1	2	45,896	RefSeq:NZ_AMHF01000095
NZ_AMHF01000082	38	38	0	0	45,568	RefSeq:NZ_AMHF01000082
NZ_AMHF01000117	39	36	1	2	45,554	RefSeq:NZ_AMHF01000117
NZ_AMHF01000097	48	48	0	0	43,061	RefSeq:NZ_AMHF01000097
NZ_AMHF01000064	35	34	0	1	40,857	RefSeq:NZ_AMHF01000064
NZ_AMHF01000104	40	36	4	0	39,866	RefSeq:NZ_AMHF01000104
NZ_AMHF01000136	38	38	0	0	39,583	RefSeq:NZ_AMHF01000136
NZ_AMHF01000125	38	37	0	1	39,385	RefSeq:NZ_AMHF01000125
NZ_AMHF01000090	38	35	1	2	38,918	RefSeq:NZ_AMHF01000090
NZ_AMHF01000094	34	34	0	0	38,447	RefSeq:NZ_AMHF01000094
NZ_AMHF01000119	38	37	0	1	38,303	RefSeq:NZ_AMHF01000119
NZ_AMHF01000130	51	50	0	1	36,883	RefSeq:NZ_AMHF01000130
NZ_AMHF01000120	35	35	0	0	33,614	RefSeq:NZ_AMHF01000120
NZ_AMHF01000042	34	28	4	2	31,107	RefSeq:NZ_AMHF01000042
NZ_AMHF01000061	30	27	2	1	30,570	RefSeq:NZ_AMHF01000061
NZ_AMHF01000078	21	21	0	0	29,508	RefSeq:NZ_AMHF01000078
NZ_AMHF01000110	29	27	0	2	29,357	RefSeq:NZ_AMHF01000110
NZ_AMHF01000134	27	27	0	0	28,942	RefSeq:NZ_AMHF01000134
NZ_AMHF01000116	25	24	0	1	27,944	RefSeq:NZ_AMHF01000116
NZ_AMHF01000084	28	28	0	0	26,417	RefSeq:NZ_AMHF01000084
NZ_AMHF01000049	26	25	0	1	26,412	RefSeq:NZ_AMHF01000049
NZ_AMHF01000065	23	22	1	0	25,548	RefSeq:NZ_AMHF01000065
NZ_AMHF01000069	20	20	0	0	25,015	RefSeq:NZ_AMHF01000069
NZ_AMHF01000062	23	23	0	0	22,301	RefSeq:NZ_AMHF01000062
NZ_AMHF01000131	16	16	0	0	21,429	RefSeq:NZ_AMHF01000131
NZ_AMHF01000004	17	16	0	1	21,118	RefSeq:NZ_AMHF01000004
NZ_AMHF01000109	22	22	0	0	20,765	RefSeq:NZ_AMHF01000109
NZ_AMHF01000133	19	19	0	0	19,004	RefSeq:NZ_AMHF01000133
NZ_AMHF01000003	20	19	0	1	18,843	RefSeq:NZ_AMHF01000003
NZ_AMHF01000036	21	21	0	0	18,565	RefSeq:NZ_AMHF01000036
NZ_AMHF01000140	17	15	1	1	18,431	RefSeq:NZ_AMHF01000140
NZ_AMHF01000111	18	18	0	0	18,252	RefSeq:NZ_AMHF01000111
NZ_AMHF01000122	17	15	0	2	17,320	RefSeq:NZ_AMHF01000122
NZ_AMHF01000085	17	16	0	1	16,860	RefSeq:NZ_AMHF01000085
NZ_AMHF01000013	16	14	1	1	16,190	RefSeq:NZ_AMHF01000013
NZ_AMHF01000011	15	14	0	1	15,861	RefSeq:NZ_AMHF01000011
NZ_AMHF01000107	19	18	0	1	15,829	RefSeq:NZ_AMHF01000107
NZ_AMHF01000068	17	17	0	0	15,825	RefSeq:NZ_AMHF01000068
NZ_AMHF01000091	13	12	0	1	15,162	RefSeq:NZ_AMHF01000091
NZ_AMHF01000035	15	14	0	1	15,035	RefSeq:NZ_AMHF01000035
NZ_AMHF01000114	15	14	0	1	14,691	RefSeq:NZ_AMHF01000114
NZ_AMHF01000113	16	16	0	0	14,508	RefSeq:NZ_AMHF01000113
NZ_AMHF01000074	14	14	0	0	14,442	RefSeq:NZ_AMHF01000074
NZ_AMHF01000105	14	12	0	2	14,090	RefSeq:NZ_AMHF01000105
NZ_AMHF01000075	13	12	0	1	14,035	RefSeq:NZ_AMHF01000075
NZ_AMHF01000088	16	15	0	1	13,468	RefSeq:NZ_AMHF01000088
NZ_AMHF01000101	16	14	0	2	13,443	RefSeq:NZ_AMHF01000101
NZ_AMHF01000135	12	11	0	1	12,472	RefSeq:NZ_AMHF01000135
NZ_AMHF01000127	12	12	0	0	12,449	RefSeq:NZ_AMHF01000127
NZ_AMHF01000055	16	16	0	0	11,802	RefSeq:NZ_AMHF01000055
62 Undisplayed Contigs/Replicons	196	186	10	39	251,247

Total:	3,646	3,468	48	130	3,786,017

Ortholog data available?	Yes

Database Contents

Genes	3,646
Pathways	271
Enzymatic Reactions	1,364
Transport Reactions	102
Polypeptides	3,511
Protein Complexes	53
Enzymes	780
Transporters	356
Compounds	1,061
Transcription Units	2,592
tRNAs	41
GO Terms	1,182

Database Version

29.0

Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus/baumannii complex Acinetobacter baumannii Acinetobacter baumannii AB_1649-8
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02471286
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	1221249
Environment	sputum
Host	Homo sapiens
Annotation Provider	NCBI
Annotation Date	2017-11-23
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	4.3
Annotation Comment	Best-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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