Database Authors
Summary Members of the genus Brucella are Gram-negative α-proteobacteria that cause brucellosis, a worldwide spread zoonosis that affects ruminants, camelids, swine, dogs, and several forms of marine and terrestrial wildlife. The disease causes abortions and infertility in the affected animals. Humans can also become infected via direct contact with affected animals and through consumption of infected dairy products and develop a chronic and debilitating condition that requires prolonged antibiotic treatment and could be fatal if untreated.

Each species of the Brucella genus displays an affinity for specific animals or groups of animals, and Brucella abortus mostly attacks cattle and other livestock, including goats, camels, and yaks. Brucella abortus, along with Brucella melitensis and Brucella suis, are among the most virulent species and are responsible for the majority of human disease [Smith90]. Once entered in the host body, Brucella abortus multiplies in intracellular milieu of phagocytic cells such as macrophages and dendritic cells, and when a female conceives, the bacteria reach the placenta via a hematogenous route and multiply very expansively, inducing abortion [Khurana21]. Erythritol, which is abundant in genital organs of ruminants and swine, is the preferential carbon source for most brucellae, and may account at least in part for the characteristic genital tropism of brucellae [Anderson65, Barbier17].

Because of the facultative, intracellular nature of these pathogens, particularly within the phagocytic cells of the immune system, they can evade the protective activity of phagocytes and replicate within them, and they can get transported to the lymph nodes where they can be released and spread further [Smith90]. Vaccination against the organism is currently based on infection with less virulent strains, such as the RB51 strain, which does not produce the O antigen of the lipopolysaccharide (LPS), making it more susceptible to recognition by the immune system [Moriyon04, Dorneles15].

This Pathway/Genome Database (PGDB) describes Brucella abortus 2308, a virulent biovar 1 strain. Like many of the other species within the Brucella genus, it contains two chromosomes. The second chromosome contains a lower density of essential genes compared to the other chromosome and is thought to be a stabilized megaplasmid [Sternon18]. This PGDB was generated by the PathoLogic [Karp11, Karp16] component of Pathway Tools software version 24.5 and MetaCyc [Caspi18] version 24.5 on 05-Feb-2021, and has undergone substantial manual curation.

Development of this PGDB was supported by BioCyc subscription revenues and by grant GM080746 from the National Institute of Health.

Genome
RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
Chromosome I2,1081,93788832,121,359RefSeq:NC_007618
Chromosome II1,1101,02633511,156,948RefSeq:NC_007624
Total:3,2182,9631211343,278,307
Ortholog data available?Yes
Database Contents
Genes3,218
Pathways258
Enzymatic Reactions1,292
Transport Reactions50
Polypeptides2,966
Protein Complexes129
Enzymes764
Transporters284
Compounds921
Transcription Units2,057
tRNAs55
Growth Media2
Transcriptional Regulation15
Protein Features3,875
GO Terms26,208
Gene Essentiality Datasets2
Database Version29.0
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Alphaproteobacteria
Hyphomicrobiales
Brucellaceae
Brucella/Ochrobactrum group
Brucella
Brucella abortus
Brucella abortus 2308
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMEA3138256
NCBI BioProjectPRJNA224116
NCBI-Taxonomy359391
Biotic Relationshipparasite
Pathogenicityanimal
Annotation ProviderNCBI RefSeq
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version5.0
Annotation CommentBest-placed reference protein set; GeneMarkS-2+
Copyright 2022, SRI International. All Rights Reserved.


References

Anderson65: Anderson JD, Smith H (1965). "The metabolism of erythritol by Brucella abortus." J Gen Microbiol 38;109-24. PMID: 14283026

Barbier17: Barbier T, Machelart A, Zuniga-Ripa A, Plovier H, Hougardy C, Lobet E, Willemart K, Muraille E, De Bolle X, Van Schaftingen E, Moriyon I, Letesson JJ (2017). "Erythritol Availability in Bovine, Murine and Human Models Highlights a Potential Role for the Host Aldose Reductase during Brucella Infection." Front Microbiol 8;1088. PMID: 28659902

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Dorneles15: Dorneles EM, Sriranganathan N, Lage AP (2015). "Recent advances in Brucella abortus vaccines." Vet Res 46;76. PMID: 26155935

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

Khurana21: Khurana SK, Sehrawat A, Tiwari R, Prasad M, Gulati B, Shabbir MZ, Chhabra R, Karthik K, Patel SK, Pathak M, Iqbal Yatoo M, Gupta VK, Dhama K, Sah R, Chaicumpa W (2021). "Bovine brucellosis - a comprehensive review." Vet Q 41(1);61-88. PMID: 33353489

Moriyon04: Moriyon I, Grillo MJ, Monreal D, Gonzalez D, Marin C, Lopez-Goni I, Mainar-Jaime RC, Moreno E, Blasco JM (2004). "Rough vaccines in animal brucellosis: structural and genetic basis and present status." Vet Res 35(1);1-38. PMID: 15099501

Smith90: Smith LD, Ficht TA (1990). "Pathogenesis of Brucella." Crit Rev Microbiol 17(3);209-30. PMID: 2154232

Sternon18: Sternon JF, Godessart P, Goncalves de Freitas R, Van der Henst M, Poncin K, Francis N, Willemart K, Christen M, Christen B, Letesson JJ, De Bolle X (2018). "Transposon Sequencing of Brucella abortus Uncovers Essential Genes for Growth In Vitro and Inside Macrophages." Infect Immun 86(8). PMID: 29844240


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