Database Authors
Summary This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii Naval-78, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_AMFZ0100006734032686354,562RefSeq:NZ_AMFZ01000067
NZ_AMFZ01000037272256151257,757RefSeq:NZ_AMFZ01000037
NZ_AMFZ01000056204188115213,118RefSeq:NZ_AMFZ01000056
NZ_AMFZ0100010520019307207,785RefSeq:NZ_AMFZ01000105
NZ_AMFZ0100002418217651207,333RefSeq:NZ_AMFZ01000024
NZ_AMFZ0100001718818404178,522RefSeq:NZ_AMFZ01000017
NZ_AMFZ0100004015814873168,384RefSeq:NZ_AMFZ01000040
NZ_AMFZ0100000815314904166,875RefSeq:NZ_AMFZ01000008
NZ_AMFZ0100002514413581145,261RefSeq:NZ_AMFZ01000025
NZ_AMFZ0100009211811305126,941RefSeq:NZ_AMFZ01000092
NZ_AMFZ0100001811811233126,916RefSeq:NZ_AMFZ01000018
NZ_AMFZ0100003010610321114,661RefSeq:NZ_AMFZ01000030
NZ_AMFZ01000053969213111,295RefSeq:NZ_AMFZ01000053
NZ_AMFZ0100009912612501107,070RefSeq:NZ_AMFZ01000099
NZ_AMFZ0100005210610303106,252RefSeq:NZ_AMFZ01000052
NZ_AMFZ01000103949202106,108RefSeq:NZ_AMFZ01000103
NZ_AMFZ0100001410810413100,545RefSeq:NZ_AMFZ01000014
NZ_AMFZ0100011286830389,946RefSeq:NZ_AMFZ01000112
NZ_AMFZ0100002865614064,811RefSeq:NZ_AMFZ01000028
NZ_AMFZ0100005158570163,893RefSeq:NZ_AMFZ01000051
NZ_AMFZ0100002351463252,830RefSeq:NZ_AMFZ01000023
NZ_AMFZ0100003245440149,462RefSeq:NZ_AMFZ01000032
NZ_AMFZ0100006251471348,231RefSeq:NZ_AMFZ01000062
NZ_AMFZ0100008742383147,550RefSeq:NZ_AMFZ01000087
NZ_AMFZ0100001045431147,479RefSeq:NZ_AMFZ01000010
NZ_AMFZ0100000340390144,486RefSeq:NZ_AMFZ01000003
NZ_AMFZ0100002141400144,365RefSeq:NZ_AMFZ01000021
NZ_AMFZ0100002936330340,255RefSeq:NZ_AMFZ01000029
NZ_AMFZ0100006541401040,178RefSeq:NZ_AMFZ01000065
NZ_AMFZ0100008129280139,131RefSeq:NZ_AMFZ01000081
NZ_AMFZ0100004957530437,218RefSeq:NZ_AMFZ01000049
NZ_AMFZ0100008542400237,093RefSeq:NZ_AMFZ01000085
NZ_AMFZ0100000230290131,495RefSeq:NZ_AMFZ01000002
NZ_AMFZ0100005728252130,737RefSeq:NZ_AMFZ01000057
NZ_AMFZ0100008427250230,632RefSeq:NZ_AMFZ01000084
NZ_AMFZ0100006829272029,315RefSeq:NZ_AMFZ01000068
NZ_AMFZ0100001329253127,992RefSeq:NZ_AMFZ01000013
NZ_AMFZ0100003421200123,975RefSeq:NZ_AMFZ01000034
NZ_AMFZ0100001121190223,016RefSeq:NZ_AMFZ01000011
NZ_AMFZ0100010823210221,804RefSeq:NZ_AMFZ01000108
NZ_AMFZ0100005036350121,533RefSeq:NZ_AMFZ01000050
NZ_AMFZ0100004216160017,537RefSeq:NZ_AMFZ01000042
NZ_AMFZ0100009719190017,292RefSeq:NZ_AMFZ01000097
NZ_AMFZ0100003114120217,037RefSeq:NZ_AMFZ01000031
NZ_AMFZ0100011113120116,083RefSeq:NZ_AMFZ01000111
NZ_AMFZ0100007712101114,200RefSeq:NZ_AMFZ01000077
NZ_AMFZ0100004713130013,954RefSeq:NZ_AMFZ01000047
NZ_AMFZ0100005414122012,880RefSeq:NZ_AMFZ01000054
NZ_AMFZ010000891212008,818RefSeq:NZ_AMFZ01000089
NZ_AMFZ010000751211018,645RefSeq:NZ_AMFZ01000075
NZ_AMFZ010000161412118,115RefSeq:NZ_AMFZ01000016
61 Undisplayed Contigs/Replicons119119049132,006
Total:3,9933,765851434,053,379
Ortholog data available?Yes
Database Contents
Genes3,992
Pathways250
Enzymatic Reactions1,262
Transport Reactions32
Polypeptides3,790
Protein Complexes42
Enzymes772
Transporters375
Compounds1,016
Transcription Units2,779
tRNAs67
GO Terms2,177
Database Version29.0
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Gammaproteobacteria
Moraxellales
Moraxellaceae
Acinetobacter
Acinetobacter calcoaceticus/baumannii complex
Acinetobacter baumannii
Acinetobacter baumannii Naval-78
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN00761247
NCBI BioProjectPRJNA224116
NCBI-Taxonomy903936
Environmentwound
Geographic LocationUSA
Collection Date2006-08-31
HostHomo sapiens
Annotation ProviderNCBI
Annotation Date2017-11-24
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version4.3
Annotation CommentBest-placed reference protein set; GeneMarkS+


References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094


Report Errors or Provide Feedback
Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.