Summary of Acaryochloris sp. CCMEE 5410, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acaryochloris sp. CCMEE 5410 CCMEE 5410, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AFEJ01000294	132	126	0	6	137,522	RefSeq:NZ_AFEJ01000294
NZ_AFEJ01000295	124	117	4	3	129,311	RefSeq:NZ_AFEJ01000295
NZ_AFEJ01000016	100	95	0	5	112,671	RefSeq:NZ_AFEJ01000016
NZ_AFEJ01000296	91	87	1	3	104,624	RefSeq:NZ_AFEJ01000296
NZ_AFEJ01000297	91	89	0	2	97,037	RefSeq:NZ_AFEJ01000297
NZ_AFEJ01000019	86	85	1	0	93,128	RefSeq:NZ_AFEJ01000019
NZ_AFEJ01000191	77	74	0	3	86,654	RefSeq:NZ_AFEJ01000191
NZ_AFEJ01000298	76	73	1	2	86,157	RefSeq:NZ_AFEJ01000298
NZ_AFEJ01000208	82	78	2	2	84,060	RefSeq:NZ_AFEJ01000208
NZ_AFEJ01000299	80	71	0	9	81,197	RefSeq:NZ_AFEJ01000299
NZ_AFEJ01000038	75	75	0	0	79,850	RefSeq:NZ_AFEJ01000038
NZ_AFEJ01000140	71	70	1	0	76,703	RefSeq:NZ_AFEJ01000140
NZ_AFEJ01000209	70	65	2	3	76,346	RefSeq:NZ_AFEJ01000209
NZ_AFEJ01000169	58	57	1	0	75,121	RefSeq:NZ_AFEJ01000169
NZ_AFEJ01000300	63	59	0	4	74,912	RefSeq:NZ_AFEJ01000300
NZ_AFEJ01000219	59	57	0	2	72,773	RefSeq:NZ_AFEJ01000219
NZ_AFEJ01000170	62	55	2	5	70,330	RefSeq:NZ_AFEJ01000170
NZ_AFEJ01000301	65	59	2	4	67,450	RefSeq:NZ_AFEJ01000301
NZ_AFEJ01000172	67	65	0	2	67,327	RefSeq:NZ_AFEJ01000172
NZ_AFEJ01000302	53	50	0	3	66,598	RefSeq:NZ_AFEJ01000302
NZ_AFEJ01000303	64	60	1	3	66,530	RefSeq:NZ_AFEJ01000303
NZ_AFEJ01000287	63	60	0	3	66,519	RefSeq:NZ_AFEJ01000287
NZ_AFEJ01000304	65	58	0	7	65,779	RefSeq:NZ_AFEJ01000304
NZ_AFEJ01000291	57	55	0	2	65,290	RefSeq:NZ_AFEJ01000291
NZ_AFEJ01000305	59	57	0	2	64,831	RefSeq:NZ_AFEJ01000305
NZ_AFEJ01000306	46	45	0	1	61,066	RefSeq:NZ_AFEJ01000306
NZ_AFEJ01000307	48	44	3	1	59,735	RefSeq:NZ_AFEJ01000307
NZ_AFEJ01000001	57	56	0	1	59,354	RefSeq:NZ_AFEJ01000001
NZ_AFEJ01000040	48	47	0	1	59,042	RefSeq:NZ_AFEJ01000040
NZ_AFEJ01000136	44	42	0	2	57,932	RefSeq:NZ_AFEJ01000136
NZ_AFEJ01000308	51	45	0	6	57,052	RefSeq:NZ_AFEJ01000308
NZ_AFEJ01000310	57	54	0	3	56,844	RefSeq:NZ_AFEJ01000310
NZ_AFEJ01000309	52	46	0	6	56,739	RefSeq:NZ_AFEJ01000309
NZ_AFEJ01000130	46	44	2	0	56,043	RefSeq:NZ_AFEJ01000130
NZ_AFEJ01000311	51	48	0	3	54,129	RefSeq:NZ_AFEJ01000311
NZ_AFEJ01000312	40	37	1	2	52,638	RefSeq:NZ_AFEJ01000312
NZ_AFEJ01000313	59	56	0	3	51,437	RefSeq:NZ_AFEJ01000313
NZ_AFEJ01000314	47	45	0	2	50,516	RefSeq:NZ_AFEJ01000314
NZ_AFEJ01000072	47	46	0	1	50,399	RefSeq:NZ_AFEJ01000072
NZ_AFEJ01000058	50	47	0	3	49,659	RefSeq:NZ_AFEJ01000058
NZ_AFEJ01000257	57	53	0	4	49,514	RefSeq:NZ_AFEJ01000257
NZ_AFEJ01000187	42	40	0	2	49,251	RefSeq:NZ_AFEJ01000187
NZ_AFEJ01000315	41	39	1	1	49,098	RefSeq:NZ_AFEJ01000315
NZ_AFEJ01000151	47	45	0	2	48,889	RefSeq:NZ_AFEJ01000151
NZ_AFEJ01000316	33	27	0	6	48,880	RefSeq:NZ_AFEJ01000316
NZ_AFEJ01000273	45	37	0	8	48,633	RefSeq:NZ_AFEJ01000273
NZ_AFEJ01000245	40	36	0	4	48,003	RefSeq:NZ_AFEJ01000245
NZ_AFEJ01000317	34	33	0	1	47,730	RefSeq:NZ_AFEJ01000317
NZ_AFEJ01000075	34	32	0	2	47,239	RefSeq:NZ_AFEJ01000075
NZ_AFEJ01000318	38	35	0	3	46,935	RefSeq:NZ_AFEJ01000318
NZ_AFEJ01000051	47	43	0	4	46,875	RefSeq:NZ_AFEJ01000051
NZ_AFEJ01000319	43	41	0	2	44,986	RefSeq:NZ_AFEJ01000319
NZ_AFEJ01000050	45	42	2	1	44,007	RefSeq:NZ_AFEJ01000050
NZ_AFEJ01000320	39	35	1	3	43,816	RefSeq:NZ_AFEJ01000320
NZ_AFEJ01000321	42	41	0	1	43,633	RefSeq:NZ_AFEJ01000321
NZ_AFEJ01000322	38	34	0	4	43,080	RefSeq:NZ_AFEJ01000322
NZ_AFEJ01000323	32	30	0	2	42,634	RefSeq:NZ_AFEJ01000323
NZ_AFEJ01000201	24	20	1	3	41,134	RefSeq:NZ_AFEJ01000201
NZ_AFEJ01000324	36	33	1	2	41,063	RefSeq:NZ_AFEJ01000324
NZ_AFEJ01000325	35	31	2	2	40,397	RefSeq:NZ_AFEJ01000325
NZ_AFEJ01000066	36	34	0	2	40,052	RefSeq:NZ_AFEJ01000066
NZ_AFEJ01000032	37	34	0	3	39,262	RefSeq:NZ_AFEJ01000032
NZ_AFEJ01000326	33	31	0	2	38,441	RefSeq:NZ_AFEJ01000326
NZ_AFEJ01000327	29	29	0	0	37,625	RefSeq:NZ_AFEJ01000327
NZ_AFEJ01000212	31	30	0	1	37,333	RefSeq:NZ_AFEJ01000212
NZ_AFEJ01000328	32	30	0	2	37,118	RefSeq:NZ_AFEJ01000328
NZ_AFEJ01000204	32	31	0	1	36,920	RefSeq:NZ_AFEJ01000204
NZ_AFEJ01000329	30	28	0	2	36,324	RefSeq:NZ_AFEJ01000329
NZ_AFEJ01000330	41	37	0	4	36,296	RefSeq:NZ_AFEJ01000330
NZ_AFEJ01000158	27	26	0	1	36,164	RefSeq:NZ_AFEJ01000158
NZ_AFEJ01000331	40	37	2	1	35,248	RefSeq:NZ_AFEJ01000331
NZ_AFEJ01000332	28	27	0	1	34,871	RefSeq:NZ_AFEJ01000332
NZ_AFEJ01000333	29	27	0	2	34,683	RefSeq:NZ_AFEJ01000333
NZ_AFEJ01000334	30	29	0	1	34,221	RefSeq:NZ_AFEJ01000334
NZ_AFEJ01000335	38	36	0	2	33,778	RefSeq:NZ_AFEJ01000335
NZ_AFEJ01000336	50	44	0	6	33,638	RefSeq:NZ_AFEJ01000336
NZ_AFEJ01000031	32	30	1	1	33,408	RefSeq:NZ_AFEJ01000031
NZ_AFEJ01000039	21	18	1	2	33,183	RefSeq:NZ_AFEJ01000039
NZ_AFEJ01000337	34	26	0	8	33,100	RefSeq:NZ_AFEJ01000337
NZ_AFEJ01000154	30	28	1	1	31,758	RefSeq:NZ_AFEJ01000154
NZ_AFEJ01000338	34	31	1	2	31,598	RefSeq:NZ_AFEJ01000338
NZ_AFEJ01000244	29	24	0	5	31,298	RefSeq:NZ_AFEJ01000244
NZ_AFEJ01000341	42	38	0	4	31,223	RefSeq:NZ_AFEJ01000341
NZ_AFEJ01000340	29	25	0	4	31,207	RefSeq:NZ_AFEJ01000340
NZ_AFEJ01000155	36	34	0	2	31,005	RefSeq:NZ_AFEJ01000155
NZ_AFEJ01000339	26	24	0	2	30,986	RefSeq:NZ_AFEJ01000339
NZ_AFEJ01000342	23	21	0	2	30,749	RefSeq:NZ_AFEJ01000342
NZ_AFEJ01000343	13	10	0	3	30,200	RefSeq:NZ_AFEJ01000343
NZ_AFEJ01000029	25	22	1	2	29,755	RefSeq:NZ_AFEJ01000029
NZ_AFEJ01000344	32	30	0	2	29,729	RefSeq:NZ_AFEJ01000344
NZ_AFEJ01000079	21	18	0	3	29,656	RefSeq:NZ_AFEJ01000079
NZ_AFEJ01000041	32	30	1	1	29,641	RefSeq:NZ_AFEJ01000041
NZ_AFEJ01000345	26	24	0	2	29,494	RefSeq:NZ_AFEJ01000345
NZ_AFEJ01000346	27	24	0	3	29,390	RefSeq:NZ_AFEJ01000346
NZ_AFEJ01000124	18	13	0	5	28,975	RefSeq:NZ_AFEJ01000124
NZ_AFEJ01000347	31	28	0	3	28,548	RefSeq:NZ_AFEJ01000347
NZ_AFEJ01000349	22	20	0	2	28,387	RefSeq:NZ_AFEJ01000349
NZ_AFEJ01000024	25	23	1	1	28,363	RefSeq:NZ_AFEJ01000024
NZ_AFEJ01000348	22	20	0	2	27,907	RefSeq:NZ_AFEJ01000348
NZ_AFEJ01000159	30	29	0	1	27,543	RefSeq:NZ_AFEJ01000159
NZ_AFEJ01000350	25	23	0	2	27,354	RefSeq:NZ_AFEJ01000350
NZ_AFEJ01000351	26	25	0	1	27,247	RefSeq:NZ_AFEJ01000351
NZ_AFEJ01000146	27	25	0	2	27,075	RefSeq:NZ_AFEJ01000146
NZ_AFEJ01000352	31	25	0	6	26,777	RefSeq:NZ_AFEJ01000352
NZ_AFEJ01000207	22	22	0	0	26,511	RefSeq:NZ_AFEJ01000207
NZ_AFEJ01000353	23	17	0	6	26,466	RefSeq:NZ_AFEJ01000353
NZ_AFEJ01000035	27	25	0	2	26,307	RefSeq:NZ_AFEJ01000035
NZ_AFEJ01000132	27	22	0	5	25,983	RefSeq:NZ_AFEJ01000132
NZ_AFEJ01000286	25	20	0	5	25,904	RefSeq:NZ_AFEJ01000286
NZ_AFEJ01000354	43	21	20	2	25,788	RefSeq:NZ_AFEJ01000354
NZ_AFEJ01000355	17	16	0	1	25,487	RefSeq:NZ_AFEJ01000355
NZ_AFEJ01000356	21	18	0	3	25,438	RefSeq:NZ_AFEJ01000356
NZ_AFEJ01000358	28	25	0	3	25,334	RefSeq:NZ_AFEJ01000358
NZ_AFEJ01000020	30	27	0	3	25,225	RefSeq:NZ_AFEJ01000020
NZ_AFEJ01000200	23	21	0	2	25,188	RefSeq:NZ_AFEJ01000200
NZ_AFEJ01000357	26	24	0	2	25,182	RefSeq:NZ_AFEJ01000357
NZ_AFEJ01000359	26	23	0	3	24,993	RefSeq:NZ_AFEJ01000359
NZ_AFEJ01000360	27	25	0	2	24,764	RefSeq:NZ_AFEJ01000360
NZ_AFEJ01000052	21	21	0	0	24,589	RefSeq:NZ_AFEJ01000052
NZ_AFEJ01000074	28	27	0	1	24,198	RefSeq:NZ_AFEJ01000074
NZ_AFEJ01000199	23	21	1	1	24,065	RefSeq:NZ_AFEJ01000199
NZ_AFEJ01000087	20	18	0	2	23,851	RefSeq:NZ_AFEJ01000087
NZ_AFEJ01000361	21	19	0	2	23,398	RefSeq:NZ_AFEJ01000361
NZ_AFEJ01000162	22	20	0	2	23,112	RefSeq:NZ_AFEJ01000162
NZ_AFEJ01000156	19	17	0	2	22,636	RefSeq:NZ_AFEJ01000156
NZ_AFEJ01000176	21	20	0	1	22,581	RefSeq:NZ_AFEJ01000176
NZ_AFEJ01000362	21	18	0	3	22,336	RefSeq:NZ_AFEJ01000362
NZ_AFEJ01000036	22	22	0	0	22,266	RefSeq:NZ_AFEJ01000036
NZ_AFEJ01000064	17	14	0	3	22,263	RefSeq:NZ_AFEJ01000064
NZ_AFEJ01000030	21	21	0	0	22,121	RefSeq:NZ_AFEJ01000030
NZ_AFEJ01000195	25	23	0	2	21,882	RefSeq:NZ_AFEJ01000195
NZ_AFEJ01000363	22	21	0	1	21,464	RefSeq:NZ_AFEJ01000363
NZ_AFEJ01000364	22	21	0	1	21,056	RefSeq:NZ_AFEJ01000364
NZ_AFEJ01000366	20	16	0	4	21,005	RefSeq:NZ_AFEJ01000366
NZ_AFEJ01000365	20	18	0	2	20,972	RefSeq:NZ_AFEJ01000365
NZ_AFEJ01000008	20	18	1	1	20,882	RefSeq:NZ_AFEJ01000008
NZ_AFEJ01000367	19	17	0	2	20,642	RefSeq:NZ_AFEJ01000367
NZ_AFEJ01000012	18	17	0	1	20,636	RefSeq:NZ_AFEJ01000012
NZ_AFEJ01000370	30	25	0	5	20,567	RefSeq:NZ_AFEJ01000370
NZ_AFEJ01000369	21	19	0	2	20,523	RefSeq:NZ_AFEJ01000369
NZ_AFEJ01000368	15	10	0	5	20,395	RefSeq:NZ_AFEJ01000368
NZ_AFEJ01000371	28	27	0	1	20,212	RefSeq:NZ_AFEJ01000371
NZ_AFEJ01000372	13	12	0	1	19,957	RefSeq:NZ_AFEJ01000372
NZ_AFEJ01000373	20	17	0	3	19,628	RefSeq:NZ_AFEJ01000373
NZ_AFEJ01000374	17	17	0	0	19,547	RefSeq:NZ_AFEJ01000374
NZ_AFEJ01000160	18	16	0	2	18,997	RefSeq:NZ_AFEJ01000160
NZ_AFEJ01000375	23	18	0	5	18,888	RefSeq:NZ_AFEJ01000375
NZ_AFEJ01000376	15	13	0	2	18,518	RefSeq:NZ_AFEJ01000376
NZ_AFEJ01000206	17	17	0	0	17,634	RefSeq:NZ_AFEJ01000206
NZ_AFEJ01000379	22	21	0	1	17,619	RefSeq:NZ_AFEJ01000379
NZ_AFEJ01000013	13	13	0	0	17,602	RefSeq:NZ_AFEJ01000013
NZ_AFEJ01000378	17	16	0	1	17,489	RefSeq:NZ_AFEJ01000378
NZ_AFEJ01000380	17	16	0	1	17,284	RefSeq:NZ_AFEJ01000380
NZ_AFEJ01000382	32	28	0	4	17,176	RefSeq:NZ_AFEJ01000382
NZ_AFEJ01000381	18	15	0	3	16,939	RefSeq:NZ_AFEJ01000381
NZ_AFEJ01000383	19	17	0	2	16,476	RefSeq:NZ_AFEJ01000383
NZ_AFEJ01000076	16	15	1	0	16,350	RefSeq:NZ_AFEJ01000076
NZ_AFEJ01000384	17	15	0	2	16,250	RefSeq:NZ_AFEJ01000384
NZ_AFEJ01000007	13	12	0	1	15,830	RefSeq:NZ_AFEJ01000007
NZ_AFEJ01000168	14	13	0	1	15,779	RefSeq:NZ_AFEJ01000168
NZ_AFEJ01000386	17	16	0	1	15,710	RefSeq:NZ_AFEJ01000386
NZ_AFEJ01000385	17	15	0	2	15,601	RefSeq:NZ_AFEJ01000385
NZ_AFEJ01000189	14	12	0	2	15,367	RefSeq:NZ_AFEJ01000189
NZ_AFEJ01000387	13	11	0	2	15,301	RefSeq:NZ_AFEJ01000387
NZ_AFEJ01000389	19	15	0	4	15,097	RefSeq:NZ_AFEJ01000389
NZ_AFEJ01000390	18	16	0	2	14,987	RefSeq:NZ_AFEJ01000390
NZ_AFEJ01000388	20	17	0	3	14,943	RefSeq:NZ_AFEJ01000388
NZ_AFEJ01000190	16	16	0	0	14,819	RefSeq:NZ_AFEJ01000190
NZ_AFEJ01000392	16	13	1	2	14,818	RefSeq:NZ_AFEJ01000392
NZ_AFEJ01000391	13	11	0	2	14,811	RefSeq:NZ_AFEJ01000391
NZ_AFEJ01000171	14	14	0	0	14,576	RefSeq:NZ_AFEJ01000171
NZ_AFEJ01000393	14	12	0	2	14,537	RefSeq:NZ_AFEJ01000393
NZ_AFEJ01000395	14	12	0	2	14,524	RefSeq:NZ_AFEJ01000395
NZ_AFEJ01000394	15	14	0	1	14,372	RefSeq:NZ_AFEJ01000394
NZ_AFEJ01000396	14	13	0	1	14,081	RefSeq:NZ_AFEJ01000396
NZ_AFEJ01000398	13	11	0	2	13,830	RefSeq:NZ_AFEJ01000398
NZ_AFEJ01000401	12	8	0	4	13,366	RefSeq:NZ_AFEJ01000401
NZ_AFEJ01000400	19	16	0	3	13,179	RefSeq:NZ_AFEJ01000400
NZ_AFEJ01000164	17	16	1	0	13,105	RefSeq:NZ_AFEJ01000164
NZ_AFEJ01000144	17	16	0	1	12,756	RefSeq:NZ_AFEJ01000144
NZ_AFEJ01000228	13	13	0	0	12,510	RefSeq:NZ_AFEJ01000228
NZ_AFEJ01000061	15	12	1	2	12,365	RefSeq:NZ_AFEJ01000061
NZ_AFEJ01000404	13	12	0	1	12,312	RefSeq:NZ_AFEJ01000404
NZ_AFEJ01000405	13	9	0	4	11,668	RefSeq:NZ_AFEJ01000405
NZ_AFEJ01000407	12	7	0	5	11,502	RefSeq:NZ_AFEJ01000407
NZ_AFEJ01000081	14	13	0	1	10,805	RefSeq:NZ_AFEJ01000081
NZ_AFEJ01000143	13	12	0	1	10,684	RefSeq:NZ_AFEJ01000143
NZ_AFEJ01000152	12	11	0	1	10,550	RefSeq:NZ_AFEJ01000152
NZ_AFEJ01000411	15	12	1	2	10,341	RefSeq:NZ_AFEJ01000411
NZ_AFEJ01000410	12	11	0	1	10,023	RefSeq:NZ_AFEJ01000410
NZ_AFEJ01000416	15	12	0	3	9,944	RefSeq:NZ_AFEJ01000416
NZ_AFEJ01000415	15	12	0	3	9,912	RefSeq:NZ_AFEJ01000415
NZ_AFEJ01000417	15	14	0	1	9,692	RefSeq:NZ_AFEJ01000417
NZ_AFEJ01000421	12	9	0	3	8,509	RefSeq:NZ_AFEJ01000421
NZ_AFEJ01000423	12	10	0	2	8,453	RefSeq:NZ_AFEJ01000423
NZ_AFEJ01000425	11	10	0	1	8,215	RefSeq:NZ_AFEJ01000425
NZ_AFEJ01000203	12	9	2	1	7,911	RefSeq:NZ_AFEJ01000203
NZ_AFEJ01000430	14	13	0	1	7,428	RefSeq:NZ_AFEJ01000430
NZ_AFEJ01000431	13	13	0	0	7,097	RefSeq:NZ_AFEJ01000431
312 Undisplayed Contigs/Replicons	651	645	6	337	956,959

Total:	7,490	6,624	76	790	7,875,477

Ortholog data available?	Yes

Database Contents

Genes	7,487
Pathways	219
Enzymatic Reactions	1,370
Transport Reactions	60
Polypeptides	6,708
Protein Complexes	19
Enzymes	957
Transporters	354
Compounds	1,115
Transcription Units	6,117
tRNAs	64

Database Version

29.0

Synonyms	Acaryochloris sp. 2-A-5-1 Salton Sea
Taxonomic Lineage	cellular organisms Bacteria <bacteria> Terrabacteria group Cyanobacteriota/Melainabacteria group Cyanobacteriota Cyanophyceae Acaryochloridales Acaryochloridaceae Acaryochloris Acaryochloris sp. CCMEE 5410
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN00016772
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	310037
Annotation Provider	NCBI
Annotation Date	2017-05-16
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	4.2
Annotation Comment	Best-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

Report Errors or Provide Feedback
Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC17.

References

General Information

Data and Services

Credits

Follow Us

Select One or More Databases:

Current Selection

Search

Genome

SmartTables

Metabolism

Analysis

References