Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [Karp10, Karp11, Caspi14] component of Pathway Tools software version 22.0 and MetaCyc version 22.0 on 22-May-2018 14:38:07.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_DS2645862,0912,00258312,391,230RefSeq:NZ_DS264586
NZ_DS26458531112,728RefSeq:NZ_DS264585
Total:2,0942,00359322,393,958
Ortholog data available?Yes
Database Contents
Genes2,093
Pathways148
Enzymatic Reactions774
Transport Reactions48
Polypeptides2,004
Protein Complexes27
Enzymes429
Transporters221
Compounds750
Transcription Units1,337
tRNAs48
Growth Media19
Protein Features2,526
GO Terms10,016
Database Version29.0
Synonyms Actinomyces odontolyticus DSM 43331
Actinomyces odontolyticus str. ATCC 17982
Actinomyces odontolyticus strain ATCC 17982
Actinomyces odontolyticus ATCC 17982
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Terrabacteria group
Actinomycetota
Actinomycetes
Actinomycetales
Actinomycetaceae
Actinomyces
Actinomyces odontolyticus
Actinomyces odontolyticus ATCC 17982
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN00627054
NCBI BioProjectPRJNA224116
NCBI-Taxonomy411466
Environmentoral
HostHomo sapiens
Human Microbiome Body Siteoral

References

Caspi14: Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, Holland TA, Keseler IM, Kothari A, Kubo A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Weerasinghe D, Zhang P, Karp PD (2014). "The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases." Nucleic Acids Res. 42(1):D459-D471. PMID: 24225315

Karp10: Karp PD, Paley SM, Krummenacker M, Latendresse M, Dale JM, Lee TJ, Kaipa P, Gilham F, Spaulding A, Popescu L, Altman T, Paulsen I, Keseler IM, Caspi R (2010). "Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology." Brief Bioinform 11(1);40-79. PMID: 19955237

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

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