Summary of Acinetobacter baumannii 4190, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii 4190, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AEPA01000156	79	76	1	2	74,480	RefSeq:NZ_AEPA01000156
NZ_AEPA01000194	58	57	0	1	67,529	RefSeq:NZ_AEPA01000194
NZ_AEPA01000195	41	37	0	4	43,433	RefSeq:NZ_AEPA01000195
NZ_AEPA01000002	36	35	0	1	42,697	RefSeq:NZ_AEPA01000002
NZ_AEPA01000104	39	37	1	1	42,527	RefSeq:NZ_AEPA01000104
NZ_AEPA01000115	38	33	2	3	41,082	RefSeq:NZ_AEPA01000115
NZ_AEPA01000070	53	51	0	2	40,184	RefSeq:NZ_AEPA01000070
NZ_AEPA01000221	32	32	0	0	36,954	RefSeq:NZ_AEPA01000221
NZ_AEPA01000050	37	33	3	1	36,814	RefSeq:NZ_AEPA01000050
NZ_AEPA01000080	56	56	0	0	36,594	RefSeq:NZ_AEPA01000080
NZ_AEPA01000159	30	25	0	5	35,848	RefSeq:NZ_AEPA01000159
NZ_AEPA01000058	31	29	0	2	35,840	RefSeq:NZ_AEPA01000058
NZ_AEPA01000062	32	30	0	2	34,856	RefSeq:NZ_AEPA01000062
NZ_AEPA01000083	36	35	0	1	33,749	RefSeq:NZ_AEPA01000083
NZ_AEPA01000057	30	26	0	4	33,216	RefSeq:NZ_AEPA01000057
NZ_AEPA01000092	31	30	0	1	32,943	RefSeq:NZ_AEPA01000092
NZ_AEPA01000174	28	23	4	1	31,529	RefSeq:NZ_AEPA01000174
NZ_AEPA01000183	30	29	0	1	30,968	RefSeq:NZ_AEPA01000183
NZ_AEPA01000203	26	22	0	4	30,085	RefSeq:NZ_AEPA01000203
NZ_AEPA01000210	24	21	0	3	29,931	RefSeq:NZ_AEPA01000210
NZ_AEPA01000193	23	21	0	2	29,192	RefSeq:NZ_AEPA01000193
NZ_AEPA01000123	25	23	0	2	28,767	RefSeq:NZ_AEPA01000123
NZ_AEPA01000096	23	19	0	4	28,203	RefSeq:NZ_AEPA01000096
NZ_AEPA01000177	25	24	0	1	28,048	RefSeq:NZ_AEPA01000177
NZ_AEPA01000088	25	23	0	2	27,621	RefSeq:NZ_AEPA01000088
NZ_AEPA01000335	28	25	0	3	27,088	RefSeq:NZ_AEPA01000335
NZ_AEPA01000036	24	21	0	3	27,019	RefSeq:NZ_AEPA01000036
NZ_AEPA01000046	25	23	0	2	26,929	RefSeq:NZ_AEPA01000046
NZ_AEPA01000201	18	16	0	2	26,817	RefSeq:NZ_AEPA01000201
NZ_AEPA01000200	23	22	0	1	26,284	RefSeq:NZ_AEPA01000200
NZ_AEPA01000132	20	15	0	5	25,774	RefSeq:NZ_AEPA01000132
NZ_AEPA01000139	23	19	1	3	25,595	RefSeq:NZ_AEPA01000139
NZ_AEPA01000117	21	19	0	2	25,488	RefSeq:NZ_AEPA01000117
NZ_AEPA01000051	18	18	0	0	25,233	RefSeq:NZ_AEPA01000051
NZ_AEPA01000268	28	24	4	0	24,713	RefSeq:NZ_AEPA01000268
NZ_AEPA01000035	25	23	0	2	24,371	RefSeq:NZ_AEPA01000035
NZ_AEPA01000237	27	25	1	1	23,954	RefSeq:NZ_AEPA01000237
NZ_AEPA01000191	22	20	0	2	23,596	RefSeq:NZ_AEPA01000191
NZ_AEPA01000211	20	19	0	1	23,493	RefSeq:NZ_AEPA01000211
NZ_AEPA01000265	23	23	0	0	23,157	RefSeq:NZ_AEPA01000265
NZ_AEPA01000094	19	17	0	2	23,025	RefSeq:NZ_AEPA01000094
NZ_AEPA01000205	26	21	0	5	22,876	RefSeq:NZ_AEPA01000205
NZ_AEPA01000247	19	16	0	3	22,736	RefSeq:NZ_AEPA01000247
NZ_AEPA01000168	19	18	0	1	22,722	RefSeq:NZ_AEPA01000168
NZ_AEPA01000064	24	21	1	2	22,675	RefSeq:NZ_AEPA01000064
NZ_AEPA01000067	13	13	0	0	21,879	RefSeq:NZ_AEPA01000067
NZ_AEPA01000236	18	16	0	2	21,855	RefSeq:NZ_AEPA01000236
NZ_AEPA01000245	25	24	1	0	21,795	RefSeq:NZ_AEPA01000245
NZ_AEPA01000182	21	21	0	0	21,795	RefSeq:NZ_AEPA01000182
NZ_AEPA01000061	24	22	0	2	21,718	RefSeq:NZ_AEPA01000061
NZ_AEPA01000072	15	14	0	1	21,427	RefSeq:NZ_AEPA01000072
NZ_AEPA01000262	21	19	0	2	21,092	RefSeq:NZ_AEPA01000262
NZ_AEPA01000354	20	19	0	1	21,089	RefSeq:NZ_AEPA01000354
NZ_AEPA01000225	14	14	0	0	20,906	RefSeq:NZ_AEPA01000225
NZ_AEPA01000263	25	19	2	4	20,778	RefSeq:NZ_AEPA01000263
NZ_AEPA01000212	17	16	0	1	20,432	RefSeq:NZ_AEPA01000212
NZ_AEPA01000090	18	18	0	0	20,308	RefSeq:NZ_AEPA01000090
NZ_AEPA01000260	20	20	0	0	19,851	RefSeq:NZ_AEPA01000260
NZ_AEPA01000176	18	17	0	1	19,616	RefSeq:NZ_AEPA01000176
NZ_AEPA01000228	17	14	2	1	19,581	RefSeq:NZ_AEPA01000228
NZ_AEPA01000069	19	17	0	2	19,327	RefSeq:NZ_AEPA01000069
NZ_AEPA01000049	16	16	0	0	19,086	RefSeq:NZ_AEPA01000049
NZ_AEPA01000181	19	18	0	1	18,960	RefSeq:NZ_AEPA01000181
NZ_AEPA01000187	15	13	0	2	18,452	RefSeq:NZ_AEPA01000187
NZ_AEPA01000112	18	14	2	2	18,425	RefSeq:NZ_AEPA01000112
NZ_AEPA01000109	14	12	1	1	18,292	RefSeq:NZ_AEPA01000109
NZ_AEPA01000137	14	14	0	0	18,124	RefSeq:NZ_AEPA01000137
NZ_AEPA01000091	12	10	0	2	17,922	RefSeq:NZ_AEPA01000091
NZ_AEPA01000219	13	11	0	2	17,528	RefSeq:NZ_AEPA01000219
NZ_AEPA01000141	14	14	0	0	17,388	RefSeq:NZ_AEPA01000141
NZ_AEPA01000075	18	17	0	1	17,212	RefSeq:NZ_AEPA01000075
NZ_AEPA01000189	13	13	0	0	17,034	RefSeq:NZ_AEPA01000189
NZ_AEPA01000270	21	19	0	2	16,929	RefSeq:NZ_AEPA01000270
NZ_AEPA01000175	14	13	0	1	16,912	RefSeq:NZ_AEPA01000175
NZ_AEPA01000110	17	15	1	1	16,911	RefSeq:NZ_AEPA01000110
NZ_AEPA01000227	13	11	0	2	16,790	RefSeq:NZ_AEPA01000227
NZ_AEPA01000100	11	11	0	0	16,737	RefSeq:NZ_AEPA01000100
NZ_AEPA01000290	18	16	0	2	16,665	RefSeq:NZ_AEPA01000290
NZ_AEPA01000026	12	9	0	3	16,604	RefSeq:NZ_AEPA01000026
NZ_AEPA01000124	15	14	0	1	16,573	RefSeq:NZ_AEPA01000124
NZ_AEPA01000217	13	12	0	1	16,259	RefSeq:NZ_AEPA01000217
NZ_AEPA01000144	13	8	0	5	15,978	RefSeq:NZ_AEPA01000144
NZ_AEPA01000224	19	19	0	0	15,961	RefSeq:NZ_AEPA01000224
NZ_AEPA01000105	15	14	0	1	15,828	RefSeq:NZ_AEPA01000105
NZ_AEPA01000215	15	14	0	1	15,825	RefSeq:NZ_AEPA01000215
NZ_AEPA01000027	12	12	0	0	15,790	RefSeq:NZ_AEPA01000027
NZ_AEPA01000322	13	12	0	1	15,492	RefSeq:NZ_AEPA01000322
NZ_AEPA01000001	14	14	0	0	15,487	RefSeq:NZ_AEPA01000001
NZ_AEPA01000254	17	17	0	0	15,396	RefSeq:NZ_AEPA01000254
p1ABST25	19	19	0	0	15,267	RefSeq:NZ_AEPA01000395
NZ_AEPA01000113	13	12	0	1	15,218	RefSeq:NZ_AEPA01000113
NZ_AEPA01000086	14	14	0	0	15,155	RefSeq:NZ_AEPA01000086
NZ_AEPA01000150	11	10	0	1	14,958	RefSeq:NZ_AEPA01000150
NZ_AEPA01000192	12	9	0	3	14,800	RefSeq:NZ_AEPA01000192
NZ_AEPA01000039	15	12	0	3	14,744	RefSeq:NZ_AEPA01000039
NZ_AEPA01000232	17	17	0	0	14,736	RefSeq:NZ_AEPA01000232
NZ_AEPA01000216	13	13	0	0	14,690	RefSeq:NZ_AEPA01000216
NZ_AEPA01000226	17	17	0	0	14,588	RefSeq:NZ_AEPA01000226
NZ_AEPA01000097	12	12	0	0	14,492	RefSeq:NZ_AEPA01000097
NZ_AEPA01000255	13	11	0	2	14,481	RefSeq:NZ_AEPA01000255
NZ_AEPA01000120	12	11	0	1	14,450	RefSeq:NZ_AEPA01000120
NZ_AEPA01000133	17	16	0	1	14,334	RefSeq:NZ_AEPA01000133
NZ_AEPA01000275	14	14	0	0	14,166	RefSeq:NZ_AEPA01000275
NZ_AEPA01000256	14	11	0	3	13,911	RefSeq:NZ_AEPA01000256
NZ_AEPA01000253	12	12	0	0	13,888	RefSeq:NZ_AEPA01000253
NZ_AEPA01000248	14	12	0	2	13,867	RefSeq:NZ_AEPA01000248
NZ_AEPA01000005	20	20	0	0	13,801	RefSeq:NZ_AEPA01000005
NZ_AEPA01000202	15	15	0	0	13,700	RefSeq:NZ_AEPA01000202
NZ_AEPA01000324	12	11	0	1	13,665	RefSeq:NZ_AEPA01000324
NZ_AEPA01000003	15	15	0	0	13,646	RefSeq:NZ_AEPA01000003
NZ_AEPA01000055	12	11	0	1	13,601	RefSeq:NZ_AEPA01000055
NZ_AEPA01000207	14	10	3	1	13,531	RefSeq:NZ_AEPA01000207
NZ_AEPA01000238	13	13	0	0	13,443	RefSeq:NZ_AEPA01000238
NZ_AEPA01000043	12	8	0	4	13,288	RefSeq:NZ_AEPA01000043
NZ_AEPA01000308	16	12	0	4	13,267	RefSeq:NZ_AEPA01000308
NZ_AEPA01000186	18	18	0	0	13,055	RefSeq:NZ_AEPA01000186
NZ_AEPA01000332	11	11	0	0	12,654	RefSeq:NZ_AEPA01000332
NZ_AEPA01000246	11	10	0	1	12,592	RefSeq:NZ_AEPA01000246
NZ_AEPA01000131	12	10	0	2	12,581	RefSeq:NZ_AEPA01000131
NZ_AEPA01000240	11	11	0	0	12,106	RefSeq:NZ_AEPA01000240
NZ_AEPA01000122	11	10	0	1	11,791	RefSeq:NZ_AEPA01000122
NZ_AEPA01000243	16	16	0	0	11,630	RefSeq:NZ_AEPA01000243
NZ_AEPA01000008	12	12	0	0	11,591	RefSeq:NZ_AEPA01000008
NZ_AEPA01000252	14	14	0	0	11,472	RefSeq:NZ_AEPA01000252
NZ_AEPA01000018	12	10	1	1	11,240	RefSeq:NZ_AEPA01000018
NZ_AEPA01000242	12	11	1	0	11,205	RefSeq:NZ_AEPA01000242
NZ_AEPA01000296	12	12	0	0	11,195	RefSeq:NZ_AEPA01000296
NZ_AEPA01000129	11	9	0	2	10,947	RefSeq:NZ_AEPA01000129
NZ_AEPA01000014	18	18	0	0	10,112	RefSeq:NZ_AEPA01000014
NZ_AEPA01000305	11	11	0	0	9,663	RefSeq:NZ_AEPA01000305
NZ_AEPA01000012	14	13	0	1	9,013	RefSeq:NZ_AEPA01000012
NZ_AEPA01000013	15	14	0	1	8,377	RefSeq:NZ_AEPA01000013
NZ_AEPA01000286	11	7	2	2	8,153	RefSeq:NZ_AEPA01000286
263 Undisplayed Contigs/Replicons	908	885	23	86	1,228,583

Total:	3,657	3,336	57	264	4,032,291

Ortholog data available?	Yes

Database Contents

Genes	3,657
Pathways	241
Enzymatic Reactions	1,262
Transport Reactions	41
Polypeptides	3,616
Protein Complexes	30
Enzymes	801
Transporters	328
Compounds	1,083
Transcription Units	2,738
tRNAs	52
GO Terms	1,225

Database Version

29.0

Synonyms	Acinetobacter baumannii str. 4190 Acinetobacter baumannii strain 4190 Acinetobacter baumannii 4190
Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus/baumannii complex Acinetobacter baumannii Acinetobacter baumannii 4190
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02471587
NCBI BioProject	PRJNA190218
NCBI-Taxonomy	886890
Annotation Provider	NCBI
Annotation Date	2014-06-21
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	2.6 (rev. 437773)
Annotation Comment	Best-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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