Database Authors
Pallavi Subhraveti1, Peter Midford, Ingrid Keseler1, Anamika Kothari1, Ron Caspi1, Peter D Karp1
1SRI International
Summary This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii AB_1650-8, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_AMHG0100001914213912149,615RefSeq:NZ_AMHG01000019
NZ_AMHG0100011511811044128,362RefSeq:NZ_AMHG01000115
NZ_AMHG0100005611111100113,589RefSeq:NZ_AMHG01000056
NZ_AMHG0100002710210200113,021RefSeq:NZ_AMHG01000027
NZ_AMHG01000116898621112,850RefSeq:NZ_AMHG01000116
NZ_AMHG0100005111010703111,631RefSeq:NZ_AMHG01000051
NZ_AMHG010000101039733101,707RefSeq:NZ_AMHG01000010
NZ_AMHG0100006880770393,281RefSeq:NZ_AMHG01000068
NZ_AMHG0100009690850591,518RefSeq:NZ_AMHG01000096
NZ_AMHG010001031041030184,460RefSeq:NZ_AMHG01000103
NZ_AMHG0100006669680173,271RefSeq:NZ_AMHG01000066
NZ_AMHG0100003873701270,233RefSeq:NZ_AMHG01000038
NZ_AMHG01000031746301169,556RefSeq:NZ_AMHG01000031
NZ_AMHG0100013371681266,724RefSeq:NZ_AMHG01000133
NZ_AMHG0100005565594263,919RefSeq:NZ_AMHG01000055
NZ_AMHG0100006160571259,819RefSeq:NZ_AMHG01000061
NZ_AMHG0100008649480159,102RefSeq:NZ_AMHG01000086
NZ_AMHG0100001556540258,337RefSeq:NZ_AMHG01000015
NZ_AMHG0100012254521158,202RefSeq:NZ_AMHG01000122
NZ_AMHG0100008147470057,922RefSeq:NZ_AMHG01000081
NZ_AMHG0100006553510257,556RefSeq:NZ_AMHG01000065
NZ_AMHG0100006247440356,424RefSeq:NZ_AMHG01000062
NZ_AMHG0100009052520055,744RefSeq:NZ_AMHG01000090
NZ_AMHG0100007055520355,650RefSeq:NZ_AMHG01000070
NZ_AMHG0100008463583254,598RefSeq:NZ_AMHG01000084
NZ_AMHG0100011353520153,859RefSeq:NZ_AMHG01000113
NZ_AMHG0100010451490252,623RefSeq:NZ_AMHG01000104
NZ_AMHG0100010145430250,439RefSeq:NZ_AMHG01000101
NZ_AMHG0100012447434048,590RefSeq:NZ_AMHG01000124
NZ_AMHG0100005757532247,015RefSeq:NZ_AMHG01000057
NZ_AMHG0100009739370243,540RefSeq:NZ_AMHG01000097
NZ_AMHG0100007945450041,691RefSeq:NZ_AMHG01000079
NZ_AMHG0100013039360341,140RefSeq:NZ_AMHG01000130
NZ_AMHG0100008738334139,912RefSeq:NZ_AMHG01000087
NZ_AMHG0100010637360138,565RefSeq:NZ_AMHG01000106
NZ_AMHG0100004034340038,439RefSeq:NZ_AMHG01000040
NZ_AMHG0100008838380038,424RefSeq:NZ_AMHG01000088
NZ_AMHG0100003237360138,277RefSeq:NZ_AMHG01000032
NZ_AMHG0100007351500136,870RefSeq:NZ_AMHG01000073
NZ_AMHG0100009936360036,646RefSeq:NZ_AMHG01000099
NZ_AMHG0100009233310236,555RefSeq:NZ_AMHG01000092
NZ_AMHG0100000735340136,403RefSeq:NZ_AMHG01000007
NZ_AMHG0100005929290033,816RefSeq:NZ_AMHG01000059
NZ_AMHG0100007435350033,644RefSeq:NZ_AMHG01000074
NZ_AMHG0100012631310033,450RefSeq:NZ_AMHG01000126
NZ_AMHG0100010930280231,798RefSeq:NZ_AMHG01000109
NZ_AMHG0100009529290030,727RefSeq:NZ_AMHG01000095
NZ_AMHG0100005324230129,951RefSeq:NZ_AMHG01000053
NZ_AMHG0100007121210029,872RefSeq:NZ_AMHG01000071
NZ_AMHG0100006926250129,775RefSeq:NZ_AMHG01000069
NZ_AMHG0100000626250126,491RefSeq:NZ_AMHG01000006
NZ_AMHG0100011128280026,417RefSeq:NZ_AMHG01000111
NZ_AMHG0100010823230026,409RefSeq:NZ_AMHG01000108
NZ_AMHG0100010223230026,022RefSeq:NZ_AMHG01000102
NZ_AMHG0100006323221025,546RefSeq:NZ_AMHG01000063
NZ_AMHG0100009120200025,016RefSeq:NZ_AMHG01000091
NZ_AMHG0100007629280124,826RefSeq:NZ_AMHG01000076
NZ_AMHG0100004521210024,281RefSeq:NZ_AMHG01000045
NZ_AMHG0100008025231123,390RefSeq:NZ_AMHG01000080
NZ_AMHG0100004125231123,207RefSeq:NZ_AMHG01000041
NZ_AMHG0100000524230123,001RefSeq:NZ_AMHG01000005
NZ_AMHG0100012325241022,507RefSeq:NZ_AMHG01000123
NZ_AMHG0100009421200122,495RefSeq:NZ_AMHG01000094
NZ_AMHG0100012916160021,506RefSeq:NZ_AMHG01000129
NZ_AMHG0100007522202020,703RefSeq:NZ_AMHG01000075
NZ_AMHG0100011821190220,230RefSeq:NZ_AMHG01000118
NZ_AMHG0100008521210018,542RefSeq:NZ_AMHG01000085
NZ_AMHG0100007216151018,415RefSeq:NZ_AMHG01000072
NZ_AMHG0100012020170317,548RefSeq:NZ_AMHG01000120
NZ_AMHG0100011214130117,163RefSeq:NZ_AMHG01000112
NZ_AMHG0100006017160116,721RefSeq:NZ_AMHG01000060
NZ_AMHG0100002615123015,976RefSeq:NZ_AMHG01000026
NZ_AMHG0100005216151014,885RefSeq:NZ_AMHG01000052
NZ_AMHG0100001115150014,642RefSeq:NZ_AMHG01000011
NZ_AMHG0100004813120114,044RefSeq:NZ_AMHG01000048
NZ_AMHG0100011714140012,993RefSeq:NZ_AMHG01000117
NZ_AMHG0100007712120012,470RefSeq:NZ_AMHG01000077
NZ_AMHG0100011912110112,438RefSeq:NZ_AMHG01000119
NZ_AMHG0100000812110110,345RefSeq:NZ_AMHG01000008
54 Undisplayed Contigs/Replicons1771631829224,397
Total:3,6563,472601243,791,738
Ortholog data available?Yes
Database Contents
Genes3,652
Pathways269
Enzymatic Reactions1,302
Transport Reactions102
Polypeptides3,520
Protein Complexes53
Enzymes779
Transporters356
Compounds1,058
Transcription Units2,600
tRNAs51
GO Terms1,184
Database Version29.0
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Gammaproteobacteria
Moraxellales
Moraxellaceae
Acinetobacter
Acinetobacter calcoaceticus/baumannii complex
Acinetobacter baumannii
Acinetobacter baumannii AB_1650-8
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN02471224
NCBI BioProjectPRJNA224116
NCBI-Taxonomy1221250
Environmentbone
HostHomo sapiens
Annotation ProviderNCBI
Annotation Date2017-11-23
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version4.3
Annotation CommentBest-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

Report Errors or Provide Feedback
Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.