Database Authors
Pallavi Subhraveti1, Peter Midford1, Anamika Kothari1, Ron Caspi1, Peter D Karp1
1SRI International
Summary This Pathway/Genome Database (PGDB) was generated on 01-June-2022 from the annotated genome of Acinetobacter sp. ATCC 27244 ATCC 27244, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 26.0) [Karp16, Karp11] using MetaCyc version 26.0 [Caspi20]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutes of Health.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_GG6659494123851017481,320RefSeq:NZ_GG665949
NZ_GG6659503343061216357,640RefSeq:NZ_GG665950
NZ_GG665962281265106297,796RefSeq:NZ_GG665962
NZ_GG665951274263110295,013RefSeq:NZ_GG665951
NZ_GG66595224923928278,742RefSeq:NZ_GG665952
NZ_GG665953189170712215,675RefSeq:NZ_GG665953
NZ_GG66595817216273185,421RefSeq:NZ_GG665958
NZ_GG66595514313247158,478RefSeq:NZ_GG665955
NZ_GG66595914113911156,968RefSeq:NZ_GG665959
NZ_GG66595413713007151,253RefSeq:NZ_GG665954
NZ_GG66596614013523145,292RefSeq:NZ_GG665966
NZ_GG66596310710016122,970RefSeq:NZ_GG665963
NZ_GG66596083790493,701RefSeq:NZ_GG665960
NZ_GG66595670631677,799RefSeq:NZ_GG665956
NZ_GG66596170660474,417RefSeq:NZ_GG665961
NZ_GG66595758533271,113RefSeq:NZ_GG665957
NZ_GG66597747470050,794RefSeq:NZ_GG665977
NZ_GG66596435330241,949RefSeq:NZ_GG665964
NZ_GG66597035330237,077RefSeq:NZ_GG665970
NZ_GG66596517170027,633RefSeq:NZ_GG665965
NZ_GG66596818171019,424RefSeq:NZ_GG665968
NZ_GG66597114130115,152RefSeq:NZ_GG665971
NZ_GG6659691270512,109RefSeq:NZ_GG665969
72 Undisplayed Contigs/Replicons474161566,277
Total:3,1002,895681373,434,013
Ortholog data available?Yes
Database Contents
Genes3,100
Pathways249
Enzymatic Reactions1,282
Transport Reactions53
Polypeptides3,045
Protein Complexes60
Enzymes698
Transporters279
Compounds951
Transcription Units2,297
tRNAs60
Protein Features3,684
GO Terms245
Database Version29.0
Sequence SourceGCF_000156555.1
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Gammaproteobacteria
Moraxellales
Moraxellaceae
Acinetobacter
unclassified Acinetobacter
Acinetobacter sp. ATCC 27244
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN00000625
NCBI BioProjectPRJNA224116
NCBI-Taxonomy525244
Environmentbiological product [ENVO:02000043]
HostHomo sapiens
Annotation ProviderNCBI RefSeq
Annotation Date2021-11-14
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version5.3
Annotation CommentBest-placed reference protein set; GeneMarkS-2+

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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