Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [1, 2] component of Pathway Tools software version 24.5 and MetaCyc [3] version 24.1 on 09-Jul-2020 18:47:56.
Genome
RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_CP0252283,3413,171611093,988,549RefSeq:NZ_CP025228
Ortholog data available?Yes
Database Contents
Genes3,341
Pathways205
Enzymatic Reactions993
Transport Reactions82
Polypeptides3,171
Protein Complexes61
Enzymes596
Transporters380
Compounds752
Transcription Units2,307
tRNAs49
Protein Features3,597
Database Version29.0
Sequence SourceGCF_004102025.1
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Terrabacteria group
Actinomycetota
Actinomycetes
Actinomycetales
Actinomycetaceae
Actinomyces
unclassified Actinomyces
Actinomyces sp. 410
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN08120347
NCBI BioProjectPRJNA224116
NCBI-Taxonomy2057800
Environment4514.4m, 93.44391/35.36549167
Geographic LocationChina
Latitude/Longitude35.3655 N 93.4439 E
Altitude (m)4514.0
Collection Date2015-05-13
HostPantholops hodgsonii
Annotation ProviderNCBI RefSeq
Annotation Date2020-04-26
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version4.11
Annotation CommentBest-placed reference protein set; GeneMarkS-2+
NCBI Genome Typerepresentative



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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.