Summary of Acinetobacter sp. NBRC 100985, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter sp. NBRC 100985 NBRC 100985, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_BAEB01000021	353	327	13	13	371,934	RefSeq:NZ_BAEB01000021
NZ_BAEB01000023	199	188	4	7	208,311	RefSeq:NZ_BAEB01000023
NZ_BAEB01000038	167	164	0	3	179,665	RefSeq:NZ_BAEB01000038
NZ_BAEB01000019	179	171	4	4	175,599	RefSeq:NZ_BAEB01000019
NZ_BAEB01000006	157	157	0	0	164,837	RefSeq:NZ_BAEB01000006
NZ_BAEB01000036	134	126	0	8	155,462	RefSeq:NZ_BAEB01000036
NZ_BAEB01000014	145	133	8	4	155,179	RefSeq:NZ_BAEB01000014
NZ_BAEB01000025	152	145	1	6	151,941	RefSeq:NZ_BAEB01000025
NZ_BAEB01000001	150	146	2	2	151,123	RefSeq:NZ_BAEB01000001
NZ_BAEB01000028	137	133	1	3	140,040	RefSeq:NZ_BAEB01000028
NZ_BAEB01000065	93	84	1	8	102,989	RefSeq:NZ_BAEB01000065
NZ_BAEB01000004	108	103	2	3	100,533	RefSeq:NZ_BAEB01000004
NZ_BAEB01000022	89	88	0	1	92,093	RefSeq:NZ_BAEB01000022
NZ_BAEB01000013	93	86	4	3	86,779	RefSeq:NZ_BAEB01000013
NZ_BAEB01000031	72	69	0	3	82,189	RefSeq:NZ_BAEB01000031
NZ_BAEB01000033	84	78	1	5	80,589	RefSeq:NZ_BAEB01000033
NZ_BAEB01000005	71	67	2	2	71,876	RefSeq:NZ_BAEB01000005
NZ_BAEB01000017	72	68	1	3	70,912	RefSeq:NZ_BAEB01000017
NZ_BAEB01000007	51	48	1	2	59,518	RefSeq:NZ_BAEB01000007
NZ_BAEB01000026	50	49	0	1	55,325	RefSeq:NZ_BAEB01000026
NZ_BAEB01000018	54	47	3	4	55,133	RefSeq:NZ_BAEB01000018
NZ_BAEB01000010	48	46	0	2	54,693	RefSeq:NZ_BAEB01000010
NZ_BAEB01000054	46	43	1	2	53,402	RefSeq:NZ_BAEB01000054
NZ_BAEB01000040	47	46	0	1	46,570	RefSeq:NZ_BAEB01000040
NZ_BAEB01000042	43	40	0	3	46,147	RefSeq:NZ_BAEB01000042
NZ_BAEB01000002	43	39	0	4	45,952	RefSeq:NZ_BAEB01000002
NZ_BAEB01000052	44	42	1	1	45,699	RefSeq:NZ_BAEB01000052
NZ_BAEB01000035	39	34	1	4	45,558	RefSeq:NZ_BAEB01000035
NZ_BAEB01000012	58	55	0	3	41,337	RefSeq:NZ_BAEB01000012
NZ_BAEB01000043	36	33	2	1	39,487	RefSeq:NZ_BAEB01000043
NZ_BAEB01000032	37	36	0	1	37,198	RefSeq:NZ_BAEB01000032
NZ_BAEB01000020	37	35	0	2	34,628	RefSeq:NZ_BAEB01000020
NZ_BAEB01000064	23	21	0	2	30,189	RefSeq:NZ_BAEB01000064
NZ_BAEB01000037	24	23	0	1	28,504	RefSeq:NZ_BAEB01000037
NZ_BAEB01000067	36	31	0	5	27,914	RefSeq:NZ_BAEB01000067
NZ_BAEB01000047	26	26	0	0	27,807	RefSeq:NZ_BAEB01000047
NZ_BAEB01000011	21	21	0	0	26,208	RefSeq:NZ_BAEB01000011
NZ_BAEB01000053	26	23	1	2	25,349	RefSeq:NZ_BAEB01000053
NZ_BAEB01000030	28	24	3	1	25,199	RefSeq:NZ_BAEB01000030
NZ_BAEB01000059	14	11	1	2	20,804	RefSeq:NZ_BAEB01000059
NZ_BAEB01000024	19	15	3	1	18,233	RefSeq:NZ_BAEB01000024
NZ_BAEB01000034	14	13	0	1	15,049	RefSeq:NZ_BAEB01000034
NZ_BAEB01000015	13	11	0	2	14,556	RefSeq:NZ_BAEB01000015
24 Undisplayed Contigs/Replicons	28	22	6	14	55,587

Total:	3,374	3,167	67	140	3,518,097

Ortholog data available?	Yes

Database Contents

Genes	3,374
Pathways	216
Enzymatic Reactions	1,346
Transport Reactions	67
Polypeptides	3,179
Protein Complexes	36
Enzymes	673
Transporters	288
Compounds	1,104
Transcription Units	2,349
tRNAs	60
GO Terms	13,423

Database Version

29.0

Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. NBRC 100985
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMD00041787
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	1071390
Annotation Provider	NCBI
Annotation Date	2017-04-6
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	4.1
Annotation Comment	Best-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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