Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [1, 2] component of Pathway Tools software version 25.0 and MetaCyc [3] version 25.0 on 02-Jul-2021 07:59:11.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_JADOUA0100000018,1297,932881098,992,097NCBI Assembly:GCF_015751755.1
Ortholog data available?No
Database Contents
Genes8,129
Pathways280
Enzymatic Reactions1,451
Transport Reactions65
Polypeptides7,935
Protein Complexes82
Enzymes1,102
Transporters680
Compounds1,154
Transcription Units5,734
tRNAs70
Protein Features9,281
Database Version29.0
Sequence SourceGCF_015751755.1
Synonyms Actinomadura malachitica
Microtetraspora viridis
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Terrabacteria group
Actinomycetota
Actinomycetes
Streptosporangiales
Thermomonosporaceae
Actinomadura
Actinomadura viridis
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN16774016
NCBI BioProjectPRJNA224116
NCBI-Taxonomy58110
Annotation ProviderNCBI RefSeq
Annotation Date2020-12-8
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version5.0
Annotation CommentBest-placed reference protein set; GeneMarkS-2+
NCBI Genome Typerepresentative


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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.