Summary of Actinobacillus pleuropneumoniae serovar 13 str. N273, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Anamika Kothari¹, Peter Midford¹, Ron Caspi¹, Lisa Moore¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 30-Oct-2024 from the annotated genome of Actinobacillus pleuropneumoniae serovar 13 str. N273, as obtained from RefSeq (annotation date: 27-MAR-2024). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 28.5) [Karp11, Karp16] using MetaCyc version 28.1 [Caspi20]. It has not undergone any manual curation or review, and may contain errors.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_ADOM01000010	174	171	1	2	182,377	RefSeq:NZ_ADOM01000010
NZ_ADOM01000017	146	136	5	5	166,299	RefSeq:NZ_ADOM01000017
NZ_ADOM01000014	89	86	1	2	108,351	RefSeq:NZ_ADOM01000014
NZ_ADOM01000026	92	84	4	4	88,435	RefSeq:NZ_ADOM01000026
NZ_ADOM01000028	77	76	0	1	84,562	RefSeq:NZ_ADOM01000028
NZ_ADOM01000005	78	78	0	0	82,629	RefSeq:NZ_ADOM01000005
NZ_ADOM01000016	89	85	3	1	80,918	RefSeq:NZ_ADOM01000016
NZ_ADOM01000011	80	74	1	5	76,889	RefSeq:NZ_ADOM01000011
NZ_ADOM01000008	71	68	1	2	75,331	RefSeq:NZ_ADOM01000008
NZ_ADOM01000012	55	54	0	1	71,944	RefSeq:NZ_ADOM01000012
NZ_ADOM01000052	81	78	2	1	69,650	RefSeq:NZ_ADOM01000052
NZ_ADOM01000043	63	63	0	0	58,459	RefSeq:NZ_ADOM01000043
NZ_ADOM01000046	59	53	5	1	57,229	RefSeq:NZ_ADOM01000046
NZ_ADOM01000002	49	49	0	0	54,319	RefSeq:NZ_ADOM01000002
NZ_ADOM01000021	37	35	0	2	51,917	RefSeq:NZ_ADOM01000021
NZ_ADOM01000047	66	66	0	0	51,078	RefSeq:NZ_ADOM01000047
NZ_ADOM01000035	41	40	0	1	47,550	RefSeq:NZ_ADOM01000035
NZ_ADOM01000044	44	43	0	1	47,316	RefSeq:NZ_ADOM01000044
NZ_ADOM01000042	42	35	4	3	47,285	RefSeq:NZ_ADOM01000042
NZ_ADOM01000003	41	41	0	0	46,004	RefSeq:NZ_ADOM01000003
NZ_ADOM01000027	44	43	0	1	45,691	RefSeq:NZ_ADOM01000027
NZ_ADOM01000031	41	39	2	0	45,206	RefSeq:NZ_ADOM01000031
NZ_ADOM01000024	37	35	0	2	42,521	RefSeq:NZ_ADOM01000024
NZ_ADOM01000049	38	38	0	0	41,796	RefSeq:NZ_ADOM01000049
NZ_ADOM01000007	41	40	1	0	41,400	RefSeq:NZ_ADOM01000007
NZ_ADOM01000032	41	36	5	0	35,451	RefSeq:NZ_ADOM01000032
NZ_ADOM01000038	33	33	0	0	34,349	RefSeq:NZ_ADOM01000038
NZ_ADOM01000053	31	30	0	1	31,587	RefSeq:NZ_ADOM01000053
NZ_ADOM01000048	35	31	4	0	30,845	RefSeq:NZ_ADOM01000048
NZ_ADOM01000018	28	28	0	0	29,285	RefSeq:NZ_ADOM01000018
NZ_ADOM01000041	40	32	8	0	28,970	RefSeq:NZ_ADOM01000041
NZ_ADOM01000004	27	26	1	0	27,209	RefSeq:NZ_ADOM01000004
NZ_ADOM01000050	25	23	0	2	25,604	RefSeq:NZ_ADOM01000050
NZ_ADOM01000051	18	18	0	0	25,370	RefSeq:NZ_ADOM01000051
NZ_ADOM01000023	18	18	0	0	25,189	RefSeq:NZ_ADOM01000023
NZ_ADOM01000034	26	26	0	0	25,163	RefSeq:NZ_ADOM01000034
NZ_ADOM01000001	21	21	0	0	23,294	RefSeq:NZ_ADOM01000001
NZ_ADOM01000029	28	24	4	0	19,764	RefSeq:NZ_ADOM01000029
NZ_ADOM01000045	16	16	0	0	17,516	RefSeq:NZ_ADOM01000045
NZ_ADOM01000039	16	14	1	1	16,342	RefSeq:NZ_ADOM01000039
NZ_ADOM01000009	12	12	0	0	12,211	RefSeq:NZ_ADOM01000009
27 Undisplayed Contigs/Replicons	46	44	4	7	76,953

Total:	2,145	2,042	57	46	2,250,258

Ortholog data available?	No

Database Contents

Genes	2,143
Pathways	278
Enzymatic Reactions	1,518
Transport Reactions	106
Polypeptides	2,063
Protein Complexes	80
Enzymes	701
Transporters	247
Compounds	1,336
Transcription Units	1,472
tRNAs	47
Protein Features	2,935
GO Terms	3,548

Database Version

29.0

Sequence Source	GCF_000178655.1
Synonyms	Actinobacillus pleuropneumoniae N273 Actinobacillus pleuropneumoniae serovar 13 strain N273 Actinobacillus pleuropneumoniae serovar 13 str. N273
Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae Actinobacillus pleuropneumoniae serovar 13 Actinobacillus pleuropneumoniae serovar 13 str. N273
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02469618
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	754262
Annotation Provider	NCBI RefSeq
Annotation Date	2024-03-27
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version	6.7
Annotation Comment	Best-placed reference protein set; GeneMarkS-2+

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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