Summary of Achromobacter xylosoxidans HMSC18C08, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 01-June-2022 from the annotated genome of Achromobacter xylosoxidans HMSC18C08, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 26.0) [Karp16, Karp11] using MetaCyc version 26.0 [Caspi20]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutes of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_KV822924	141	133	1	7	148,856	RefSeq:NZ_KV822924
NZ_KV822624	76	74	1	1	79,109	RefSeq:NZ_KV822624
NZ_KV822383	93	93	0	0	78,356	RefSeq:NZ_KV822383
NZ_KV822279	62	61	0	1	60,429	RefSeq:NZ_KV822279
NZ_KV822249	55	52	3	0	56,709	RefSeq:NZ_KV822249
NZ_KV822859	57	55	1	1	55,931	RefSeq:NZ_KV822859
NZ_KV822342	52	47	0	5	51,776	RefSeq:NZ_KV822342
NZ_KV822942	47	46	0	1	49,734	RefSeq:NZ_KV822942
NZ_KV822319	43	42	1	0	46,075	RefSeq:NZ_KV822319
NZ_KV822960	36	34	1	1	45,559	RefSeq:NZ_KV822960
NZ_KV822841	52	52	0	0	44,858	RefSeq:NZ_KV822841
NZ_KV822660	30	30	0	0	43,598	RefSeq:NZ_KV822660
NZ_KV823064	34	31	0	3	41,250	RefSeq:NZ_KV823064
NZ_KV822923	35	32	3	0	40,239	RefSeq:NZ_KV822923
NZ_KV822932	35	33	2	0	40,107	RefSeq:NZ_KV822932
NZ_KV822677	35	34	0	1	39,026	RefSeq:NZ_KV822677
NZ_KV822523	38	38	0	0	38,937	RefSeq:NZ_KV822523
NZ_KV822776	40	39	1	0	38,013	RefSeq:NZ_KV822776
NZ_KV822646	26	25	0	1	37,676	RefSeq:NZ_KV822646
NZ_KV822639	36	35	1	0	36,014	RefSeq:NZ_KV822639
NZ_KV822638	31	31	0	0	35,973	RefSeq:NZ_KV822638
NZ_KV822765	36	35	0	1	35,764	RefSeq:NZ_KV822765
NZ_KV822292	34	31	0	3	33,724	RefSeq:NZ_KV822292
NZ_KV822410	34	33	0	1	33,466	RefSeq:NZ_KV822410
NZ_KV822838	38	32	3	3	33,135	RefSeq:NZ_KV822838
NZ_KV822907	25	25	0	0	32,498	RefSeq:NZ_KV822907
NZ_KV822515	36	34	1	1	32,180	RefSeq:NZ_KV822515
NZ_KV822449	31	30	1	0	31,163	RefSeq:NZ_KV822449
NZ_KV823149	28	28	0	0	31,008	RefSeq:NZ_KV823149
NZ_KV822983	31	29	0	2	30,869	RefSeq:NZ_KV822983
NZ_KV822528	29	28	0	1	30,167	RefSeq:NZ_KV822528
NZ_KV823072	34	31	1	2	29,763	RefSeq:NZ_KV823072
NZ_KV822994	27	27	0	0	29,491	RefSeq:NZ_KV822994
NZ_KV823156	43	43	0	0	28,557	RefSeq:NZ_KV823156
NZ_KV822774	23	23	0	0	28,327	RefSeq:NZ_KV822774
NZ_KV823142	30	28	1	1	27,806	RefSeq:NZ_KV823142
NZ_KV823214	25	24	0	1	27,803	RefSeq:NZ_KV823214
NZ_KV822825	28	28	0	0	27,060	RefSeq:NZ_KV822825
NZ_KV822621	28	28	0	0	26,658	RefSeq:NZ_KV822621
NZ_KV822794	22	21	1	0	26,509	RefSeq:NZ_KV822794
NZ_KV822656	27	27	0	0	26,377	RefSeq:NZ_KV822656
NZ_KV822637	21	21	0	0	25,532	RefSeq:NZ_KV822637
NZ_KV823185	21	21	0	0	25,076	RefSeq:NZ_KV823185
NZ_KV822955	26	24	2	0	24,787	RefSeq:NZ_KV822955
NZ_KV823122	21	21	0	0	24,767	RefSeq:NZ_KV823122
NZ_KV822837	30	29	0	1	24,491	RefSeq:NZ_KV822837
NZ_KV822768	26	25	1	0	24,106	RefSeq:NZ_KV822768
NZ_KV822726	22	22	0	0	23,621	RefSeq:NZ_KV822726
NZ_KV823195	14	14	0	0	23,322	RefSeq:NZ_KV823195
NZ_KV822909	18	18	0	0	22,019	RefSeq:NZ_KV822909
NZ_KV823200	16	15	0	1	20,817	RefSeq:NZ_KV823200
NZ_KV823138	21	21	0	0	20,736	RefSeq:NZ_KV823138
NZ_KV823036	26	26	0	0	20,684	RefSeq:NZ_KV823036
NZ_KV822832	25	24	0	1	20,309	RefSeq:NZ_KV822832
NZ_KV822286	16	16	0	0	20,197	RefSeq:NZ_KV822286
NZ_KV822904	12	12	0	0	20,114	RefSeq:NZ_KV822904
NZ_KV822796	15	14	0	1	19,821	RefSeq:NZ_KV822796
NZ_KV822751	16	15	0	1	19,308	RefSeq:NZ_KV822751
NZ_KV822834	19	19	0	0	19,268	RefSeq:NZ_KV822834
NZ_KV823133	20	19	0	1	19,137	RefSeq:NZ_KV823133
NZ_KV823129	20	20	0	0	19,117	RefSeq:NZ_KV823129
NZ_KV822705	17	17	0	0	19,009	RefSeq:NZ_KV822705
NZ_KV823207	20	19	0	1	18,922	RefSeq:NZ_KV823207
NZ_KV822467	15	14	0	1	18,907	RefSeq:NZ_KV822467
NZ_KV822384	21	20	0	1	18,735	RefSeq:NZ_KV822384
NZ_KV822733	21	19	0	2	18,733	RefSeq:NZ_KV822733
NZ_KV822722	19	18	0	1	18,680	RefSeq:NZ_KV822722
NZ_KV822799	15	15	0	0	18,308	RefSeq:NZ_KV822799
NZ_KV823098	14	14	0	0	18,168	RefSeq:NZ_KV823098
NZ_KV822959	22	22	0	0	17,898	RefSeq:NZ_KV822959
NZ_KV822930	19	17	0	2	17,885	RefSeq:NZ_KV822930
NZ_KV822295	20	18	2	0	17,852	RefSeq:NZ_KV822295
NZ_KV822933	12	12	0	0	17,741	RefSeq:NZ_KV822933
NZ_KV822790	18	16	0	2	17,724	RefSeq:NZ_KV822790
NZ_KV822885	16	16	0	0	17,647	RefSeq:NZ_KV822885
NZ_KV822504	8	8	0	0	17,645	RefSeq:NZ_KV822504
NZ_KV822704	18	18	0	0	17,570	RefSeq:NZ_KV822704
NZ_KV822269	18	17	0	1	17,478	RefSeq:NZ_KV822269
NZ_KV822452	17	16	0	1	17,469	RefSeq:NZ_KV822452
NZ_KV822970	13	13	0	0	17,386	RefSeq:NZ_KV822970
NZ_KV822828	12	12	0	0	17,322	RefSeq:NZ_KV822828
NZ_KV823120	15	15	0	0	17,263	RefSeq:NZ_KV823120
NZ_KV822888	10	10	0	0	17,202	RefSeq:NZ_KV822888
NZ_KV822741	17	17	0	0	17,174	RefSeq:NZ_KV822741
NZ_KV822931	13	12	0	1	17,047	RefSeq:NZ_KV822931
NZ_KV822631	17	15	0	2	16,944	RefSeq:NZ_KV822631
NZ_KV822248	13	13	0	0	16,708	RefSeq:NZ_KV822248
NZ_KV822916	15	14	1	0	16,628	RefSeq:NZ_KV822916
NZ_KV822495	15	14	1	0	16,375	RefSeq:NZ_KV822495
NZ_KV822584	15	15	0	0	16,331	RefSeq:NZ_KV822584
NZ_KV822914	13	13	0	0	16,219	RefSeq:NZ_KV822914
NZ_KV823069	13	12	1	0	16,219	RefSeq:NZ_KV823069
NZ_KV822328	12	12	0	0	16,160	RefSeq:NZ_KV822328
NZ_KV822686	12	11	0	1	16,153	RefSeq:NZ_KV822686
NZ_KV822453	15	13	0	2	16,060	RefSeq:NZ_KV822453
NZ_KV823108	15	15	0	0	16,007	RefSeq:NZ_KV823108
NZ_KV822861	18	18	0	0	15,971	RefSeq:NZ_KV822861
NZ_KV822977	14	13	1	0	15,878	RefSeq:NZ_KV822977
NZ_KV822263	14	14	0	0	15,610	RefSeq:NZ_KV822263
NZ_KV822256	15	13	0	2	15,586	RefSeq:NZ_KV822256
NZ_KV822466	16	13	0	3	15,471	RefSeq:NZ_KV822466
NZ_KV822391	13	13	0	0	15,470	RefSeq:NZ_KV822391
NZ_KV823199	14	13	0	1	15,414	RefSeq:NZ_KV823199
NZ_KV822688	12	11	0	1	15,397	RefSeq:NZ_KV822688
NZ_KV822823	16	15	0	1	15,230	RefSeq:NZ_KV822823
NZ_KV822680	12	12	0	0	14,910	RefSeq:NZ_KV822680
NZ_KV822613	17	15	0	2	14,673	RefSeq:NZ_KV822613
NZ_KV822830	18	17	0	1	14,408	RefSeq:NZ_KV822830
NZ_KV822336	12	12	0	0	14,376	RefSeq:NZ_KV822336
NZ_KV822217	12	11	0	1	14,358	RefSeq:NZ_KV822217
NZ_KV823020	15	14	0	1	14,249	RefSeq:NZ_KV823020
NZ_KV822971	15	14	1	0	14,171	RefSeq:NZ_KV822971
NZ_KV823041	12	12	0	0	14,006	RefSeq:NZ_KV823041
NZ_KV823004	11	11	0	0	13,829	RefSeq:NZ_KV823004
NZ_KV822713	14	14	0	0	13,795	RefSeq:NZ_KV822713
NZ_KV822572	13	12	0	1	13,746	RefSeq:NZ_KV822572
NZ_KV822237	10	10	0	0	13,649	RefSeq:NZ_KV822237
NZ_KV822876	11	11	0	0	13,618	RefSeq:NZ_KV822876
NZ_KV822344	13	11	0	2	13,379	RefSeq:NZ_KV822344
NZ_KV822883	18	16	1	1	13,140	RefSeq:NZ_KV822883
NZ_KV822443	12	12	0	0	13,079	RefSeq:NZ_KV822443
NZ_KV822460	11	10	0	1	13,008	RefSeq:NZ_KV822460
NZ_KV822872	13	12	0	1	12,898	RefSeq:NZ_KV822872
NZ_KV822520	12	11	0	1	12,842	RefSeq:NZ_KV822520
NZ_KV823096	13	13	0	0	12,823	RefSeq:NZ_KV823096
NZ_KV822568	13	10	3	0	12,753	RefSeq:NZ_KV822568
NZ_KV823001	12	12	0	0	12,734	RefSeq:NZ_KV823001
NZ_KV822392	12	10	0	2	12,692	RefSeq:NZ_KV822392
NZ_KV823092	13	12	1	0	12,439	RefSeq:NZ_KV823092
NZ_KV822648	12	11	0	1	12,189	RefSeq:NZ_KV822648
NZ_KV823003	13	12	0	1	12,186	RefSeq:NZ_KV823003
NZ_KV822402	14	12	0	2	12,092	RefSeq:NZ_KV822402
NZ_KV822405	17	15	0	2	12,043	RefSeq:NZ_KV822405
NZ_KV823113	12	11	0	1	11,990	RefSeq:NZ_KV823113
NZ_KV822829	14	13	1	0	11,918	RefSeq:NZ_KV822829
NZ_KV822954	11	10	0	1	11,721	RefSeq:NZ_KV822954
NZ_KV823058	13	11	0	2	11,665	RefSeq:NZ_KV823058
NZ_KV822817	12	12	0	0	11,588	RefSeq:NZ_KV822817
NZ_KV823211	11	10	1	0	11,555	RefSeq:NZ_KV823211
NZ_KV822728	13	12	0	1	11,528	RefSeq:NZ_KV822728
NZ_KV822906	10	9	0	1	11,501	RefSeq:NZ_KV822906
NZ_KV822986	12	11	0	1	11,312	RefSeq:NZ_KV822986
NZ_KV822297	10	8	0	2	11,185	RefSeq:NZ_KV822297
NZ_KV823027	13	13	0	0	10,053	RefSeq:NZ_KV823027
NZ_KV822802	9	8	0	1	10,049	RefSeq:NZ_KV822802
NZ_KV823076	12	11	1	0	9,760	RefSeq:NZ_KV823076
NZ_KV822724	10	10	0	0	9,358	RefSeq:NZ_KV822724
NZ_KV822716	12	9	3	0	9,196	RefSeq:NZ_KV822716
NZ_KV822668	11	11	0	0	8,998	RefSeq:NZ_KV822668
NZ_KV822643	12	11	1	0	8,458	RefSeq:NZ_KV822643
NZ_KV822701	11	11	0	0	7,676	RefSeq:NZ_KV822701
861 Undisplayed Contigs/Replicons	2,291	2,279	12	319	3,383,057

Total:	5,933	5,457	57	419	6,844,028

Ortholog data available?	No

Database Contents

Genes	5,933
Pathways	307
Enzymatic Reactions	1,595
Transport Reactions	95
Polypeptides	6,539
Protein Complexes	224
Enzymes	1,028
Transporters	864
Compounds	1,156
Transcription Units	4,716
tRNAs	49
Protein Features	6,826
GO Terms	2,306

Database Version

29.0

Sequence Source	GCF_001815885.1
Synonyms	Achromobacter sp. 2789STDY5608606 Achromobacter sp. 2789STDY5608609 Achromobacter sp. 2789STDY5608611 Achromobacter sp. 2789STDY5608612 Achromobacter sp. 2789STDY5608616 Achromobacter sp. 2789STDY5608618 Achromobacter sp. 2789STDY5608619 Achromobacter sp. 2789STDY5608620 Achromobacter sp. 2789STDY5608622 Achromobacter sp. 2789STDY5608623 Achromobacter sp. 2789STDY5608624 Achromobacter sp. 2789STDY5608629 Achromobacter sp. 2789STDY5608630 Achromobacter sp. 2789STDY5608632 Achromobacter sp. 2789STDY5663426 Achromobacter sp. 2789STDY5663429 Achromobacter sp. 2789STDY5663443 Achromobacter sp. 2789STDY5663447 Achromobacter sp. AHJR1 Achromobacter sp. CCUG 2349 Achromobacter sp. CCUG 48135 Achromobacter sp. CCUG 48386 Achromobacter sp. ES-6 Achromobacter sp. GAD3 Achromobacter sp. HMSC056C09 Achromobacter sp. HMSC057D05 Achromobacter sp. HMSC070F04 Achromobacter sp. HMSC15D03 Achromobacter sp. HMSC18C08 Achromobacter xilosoxidans Achromobacter xylosoxidans KF701 Achromobacter xylosoxidans subsp. xylosoxidans Achromobacter xylosoxydans Alcaligenes denitrificans subsp. xylosoxydans Alcaligenes xylosoxidans subsp. xylosoxidans Alcaligenes xylosoxidans Alcaligenes xylosoxydans Flavobacterium sp. 650
Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter xylosoxidans
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN03436202
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	85698
Environment	Respiratory
Host	Homo sapiens
Human Microbiome Body Site	not-specified
Annotation Provider	NCBI RefSeq
Annotation Date	2022-01-13
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version	5.3
Annotation Comment	Best-placed reference protein set; GeneMarkS-2+

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC17A.

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