Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [1, 2] component of Pathway Tools software version 25.0 and MetaCyc [3] version 25.0 on 30-Jun-2021 03:36:41.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_JACHMQ0100000017,6227,397851408,190,213NCBI Assembly:GCF_014208105.1
Ortholog data available?No
Database Contents
Genes7,622
Pathways283
Enzymatic Reactions1,446
Transport Reactions53
Polypeptides7,399
Protein Complexes71
Enzymes1,043
Transporters644
Compounds1,127
Transcription Units5,433
tRNAs67
Protein Features8,528
Database Version29.0
Sequence SourceGCF_014208105.1
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Terrabacteria group
Actinomycetota
Actinomycetes
Streptosporangiales
Thermomonosporaceae
Actinomadura
Actinomadura coerulea
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN05878273
NCBI BioProjectPRJNA224116
NCBI-Taxonomy46159
Annotation ProviderNCBI RefSeq
Annotation Date2020-08-17
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version4.12
Annotation CommentBest-placed reference protein set; GeneMarkS-2+
NCBI Genome Typerepresentative


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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.