Summary of Acetivibrio ethanolgignens ACET-33324, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford¹, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 25-Oct-2020 from the annotated genome of Acetivibrio ethanolgignens ACET-33324, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 24.5) [Karp16, Karp11] using MetaCyc version 24.1 [Caspi20]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutes of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_LNAM01000001	152	147	0	5	163,531	RefSeq:NZ_LNAM01000001
NZ_LNAM01000112	131	126	0	5	123,583	RefSeq:NZ_LNAM01000112
NZ_LNAM01000153	133	121	3	9	120,468	RefSeq:NZ_LNAM01000153
NZ_LNAM01000164	111	106	0	5	116,698	RefSeq:NZ_LNAM01000164
NZ_LNAM01000175	100	99	0	1	105,123	RefSeq:NZ_LNAM01000175
NZ_LNAM01000186	99	96	1	2	101,473	RefSeq:NZ_LNAM01000186
NZ_LNAM01000197	97	92	0	5	100,681	RefSeq:NZ_LNAM01000197
NZ_LNAM01000208	84	75	5	4	86,117	RefSeq:NZ_LNAM01000208
NZ_LNAM01000219	79	78	0	1	84,632	RefSeq:NZ_LNAM01000219
NZ_LNAM01000002	98	91	0	7	83,069	RefSeq:NZ_LNAM01000002
NZ_LNAM01000013	83	80	0	3	75,956	RefSeq:NZ_LNAM01000013
NZ_LNAM01000024	97	95	0	2	72,009	RefSeq:NZ_LNAM01000024
NZ_LNAM01000035	82	75	0	7	68,633	RefSeq:NZ_LNAM01000035
NZ_LNAM01000046	59	57	0	2	64,742	RefSeq:NZ_LNAM01000046
NZ_LNAM01000057	52	52	0	0	63,578	RefSeq:NZ_LNAM01000057
NZ_LNAM01000068	67	67	0	0	62,653	RefSeq:NZ_LNAM01000068
NZ_LNAM01000079	54	49	0	5	57,995	RefSeq:NZ_LNAM01000079
NZ_LNAM01000090	63	59	2	2	57,108	RefSeq:NZ_LNAM01000090
NZ_LNAM01000101	56	56	0	0	56,273	RefSeq:NZ_LNAM01000101
NZ_LNAM01000113	52	52	0	0	50,888	RefSeq:NZ_LNAM01000113
NZ_LNAM01000124	38	36	0	2	48,730	RefSeq:NZ_LNAM01000124
NZ_LNAM01000135	48	45	0	3	48,152	RefSeq:NZ_LNAM01000135
NZ_LNAM01000146	45	41	0	4	47,584	RefSeq:NZ_LNAM01000146
NZ_LNAM01000147	44	44	0	0	47,428	RefSeq:NZ_LNAM01000147
NZ_LNAM01000148	43	42	1	0	46,596	RefSeq:NZ_LNAM01000148
NZ_LNAM01000149	38	38	0	0	42,211	RefSeq:NZ_LNAM01000149
NZ_LNAM01000150	42	41	1	0	40,760	RefSeq:NZ_LNAM01000150
NZ_LNAM01000151	40	39	1	0	40,372	RefSeq:NZ_LNAM01000151
NZ_LNAM01000152	55	45	9	1	38,404	RefSeq:NZ_LNAM01000152
NZ_LNAM01000154	32	31	1	0	37,155	RefSeq:NZ_LNAM01000154
NZ_LNAM01000155	31	30	1	0	34,631	RefSeq:NZ_LNAM01000155
NZ_LNAM01000156	43	40	0	3	32,694	RefSeq:NZ_LNAM01000156
NZ_LNAM01000157	31	29	1	1	32,408	RefSeq:NZ_LNAM01000157
NZ_LNAM01000158	29	27	1	1	30,087	RefSeq:NZ_LNAM01000158
NZ_LNAM01000159	32	29	2	1	29,280	RefSeq:NZ_LNAM01000159
NZ_LNAM01000160	30	28	0	2	29,234	RefSeq:NZ_LNAM01000160
NZ_LNAM01000161	31	30	1	0	29,123	RefSeq:NZ_LNAM01000161
NZ_LNAM01000162	34	33	0	1	28,018	RefSeq:NZ_LNAM01000162
NZ_LNAM01000163	22	18	0	4	25,987	RefSeq:NZ_LNAM01000163
NZ_LNAM01000165	25	24	0	1	25,611	RefSeq:NZ_LNAM01000165
NZ_LNAM01000166	31	26	4	1	25,061	RefSeq:NZ_LNAM01000166
NZ_LNAM01000167	22	21	0	1	24,328	RefSeq:NZ_LNAM01000167
NZ_LNAM01000168	25	23	0	2	24,133	RefSeq:NZ_LNAM01000168
NZ_LNAM01000169	27	22	0	5	23,721	RefSeq:NZ_LNAM01000169
NZ_LNAM01000170	20	20	0	0	23,346	RefSeq:NZ_LNAM01000170
NZ_LNAM01000171	15	15	0	0	23,193	RefSeq:NZ_LNAM01000171
NZ_LNAM01000172	21	19	2	0	22,744	RefSeq:NZ_LNAM01000172
NZ_LNAM01000173	17	17	0	0	22,556	RefSeq:NZ_LNAM01000173
NZ_LNAM01000174	18	18	0	0	22,323	RefSeq:NZ_LNAM01000174
NZ_LNAM01000176	22	21	0	1	22,301	RefSeq:NZ_LNAM01000176
NZ_LNAM01000177	22	20	0	2	21,974	RefSeq:NZ_LNAM01000177
NZ_LNAM01000178	30	30	0	0	21,799	RefSeq:NZ_LNAM01000178
NZ_LNAM01000179	12	12	0	0	21,319	RefSeq:NZ_LNAM01000179
NZ_LNAM01000180	23	22	0	1	21,126	RefSeq:NZ_LNAM01000180
NZ_LNAM01000181	17	17	0	0	20,563	RefSeq:NZ_LNAM01000181
NZ_LNAM01000182	19	19	0	0	20,202	RefSeq:NZ_LNAM01000182
NZ_LNAM01000183	18	17	0	1	20,078	RefSeq:NZ_LNAM01000183
NZ_LNAM01000184	35	18	16	1	19,638	RefSeq:NZ_LNAM01000184
NZ_LNAM01000185	17	15	0	2	18,887	RefSeq:NZ_LNAM01000185
NZ_LNAM01000187	15	15	0	0	18,540	RefSeq:NZ_LNAM01000187
NZ_LNAM01000188	17	17	0	0	16,834	RefSeq:NZ_LNAM01000188
NZ_LNAM01000189	15	15	0	0	16,811	RefSeq:NZ_LNAM01000189
NZ_LNAM01000190	19	18	1	0	16,625	RefSeq:NZ_LNAM01000190
NZ_LNAM01000191	12	12	0	0	16,540	RefSeq:NZ_LNAM01000191
NZ_LNAM01000192	15	12	0	3	15,520	RefSeq:NZ_LNAM01000192
NZ_LNAM01000193	16	15	0	1	14,438	RefSeq:NZ_LNAM01000193
NZ_LNAM01000195	16	14	0	2	14,135	RefSeq:NZ_LNAM01000195
NZ_LNAM01000196	12	12	0	0	13,486	RefSeq:NZ_LNAM01000196
NZ_LNAM01000198	13	13	0	0	13,254	RefSeq:NZ_LNAM01000198
NZ_LNAM01000200	20	19	0	1	12,935	RefSeq:NZ_LNAM01000200
NZ_LNAM01000201	14	14	0	0	12,907	RefSeq:NZ_LNAM01000201
NZ_LNAM01000202	14	11	0	3	12,836	RefSeq:NZ_LNAM01000202
NZ_LNAM01000203	28	25	1	2	12,695	RefSeq:NZ_LNAM01000203
NZ_LNAM01000205	12	12	0	0	12,415	RefSeq:NZ_LNAM01000205
NZ_LNAM01000206	18	18	0	0	12,078	RefSeq:NZ_LNAM01000206
NZ_LNAM01000207	13	13	0	0	11,909	RefSeq:NZ_LNAM01000207
NZ_LNAM01000210	13	6	7	0	11,537	RefSeq:NZ_LNAM01000210
NZ_LNAM01000223	14	13	0	1	8,908	RefSeq:NZ_LNAM01000223
151 Undisplayed Contigs/Replicons	420	415	5	57	526,875

Total:	3,666	3,424	66	176	3,660,245

Ortholog data available?	No

Database Contents

Genes	3,666
Pathways	152
Enzymatic Reactions	832
Transport Reactions	64
Polypeptides	3,491
Protein Complexes	27
Enzymes	559
Transporters	274
Compounds	613
Transcription Units	2,084
tRNAs	55
Protein Features	3,950
GO Terms	11,980

Database Version

29.0

Sequence Source	GCF_001461035.1
Synonyms	Acetivibrio ethanoligignens
Taxonomic Lineage	cellular organisms Bacteria <bacteria> Terrabacteria group Bacillota Clostridia Eubacteriales Oscillospiraceae Acetivibrio Acetivibrio ethanolgignens
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN04229414
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	290052
Environment	gastrointestinal tract
Geographic Location	China
Collection Date	2012-07-19
Host	Homo sapiens
Human Microbiome Body Site	gastrointestinal-tract
Annotation Provider	NCBI RefSeq
Annotation Date	2020-06-4
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version	4.11
Annotation Comment	Best-placed reference protein set; GeneMarkS-2+
NCBI Genome Type	representative

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC17.

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