Summary of Acinetobacter radioresistens SK82, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 01-June-2022 from the annotated genome of Acinetobacter radioresistens SK82, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 26.0) [Karp16, Karp11] using MetaCyc version 26.0 [Caspi20]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutes of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_ACVR01000013	234	218	3	13	249,682	RefSeq:NZ_ACVR01000013
NZ_ACVR01000029	199	196	1	2	193,951	RefSeq:NZ_ACVR01000029
NZ_ACVR01000020	183	167	10	6	192,025	RefSeq:NZ_ACVR01000020
NZ_ACVR01000061	149	140	6	3	173,978	RefSeq:NZ_ACVR01000061
NZ_ACVR01000080	162	158	4	0	166,237	RefSeq:NZ_ACVR01000080
NZ_ACVR01000069	131	128	2	1	141,696	RefSeq:NZ_ACVR01000069
NZ_ACVR01000072	123	122	0	1	129,451	RefSeq:NZ_ACVR01000072
NZ_ACVR01000032	114	109	4	1	116,526	RefSeq:NZ_ACVR01000032
NZ_ACVR01000062	96	89	6	1	111,001	RefSeq:NZ_ACVR01000062
NZ_ACVR01000025	90	88	0	2	103,142	RefSeq:NZ_ACVR01000025
NZ_ACVR01000041	112	107	4	1	98,516	RefSeq:NZ_ACVR01000041
NZ_ACVR01000065	96	95	0	1	98,309	RefSeq:NZ_ACVR01000065
NZ_ACVR01000073	79	75	4	0	83,508	RefSeq:NZ_ACVR01000073
NZ_ACVR01000071	77	76	1	0	78,698	RefSeq:NZ_ACVR01000071
NZ_ACVR01000011	69	69	0	0	75,194	RefSeq:NZ_ACVR01000011
NZ_ACVR01000038	61	58	3	0	71,190	RefSeq:NZ_ACVR01000038
NZ_ACVR01000001	68	68	0	0	71,096	RefSeq:NZ_ACVR01000001
NZ_ACVR01000046	59	57	0	2	70,520	RefSeq:NZ_ACVR01000046
NZ_ACVR01000015	66	65	0	1	67,124	RefSeq:NZ_ACVR01000015
NZ_ACVR01000019	58	57	0	1	67,035	RefSeq:NZ_ACVR01000019
NZ_ACVR01000007	53	49	1	3	63,094	RefSeq:NZ_ACVR01000007
NZ_ACVR01000030	55	51	4	0	55,735	RefSeq:NZ_ACVR01000030
NZ_ACVR01000028	46	46	0	0	53,055	RefSeq:NZ_ACVR01000028
NZ_ACVR01000045	49	47	1	1	50,902	RefSeq:NZ_ACVR01000045
NZ_ACVR01000021	55	52	2	1	50,028	RefSeq:NZ_ACVR01000021
NZ_ACVR01000050	43	43	0	0	48,497	RefSeq:NZ_ACVR01000050
NZ_ACVR01000036	37	36	0	1	42,835	RefSeq:NZ_ACVR01000036
NZ_ACVR01000002	39	39	0	0	37,000	RefSeq:NZ_ACVR01000002
NZ_ACVR01000060	31	31	0	0	36,178	RefSeq:NZ_ACVR01000060
NZ_ACVR01000076	28	27	0	1	32,106	RefSeq:NZ_ACVR01000076
NZ_ACVR01000009	33	32	0	1	28,795	RefSeq:NZ_ACVR01000009
NZ_ACVR01000066	23	21	2	0	26,802	RefSeq:NZ_ACVR01000066
NZ_ACVR01000037	23	21	0	2	26,095	RefSeq:NZ_ACVR01000037
NZ_ACVR01000033	29	29	0	0	25,510	RefSeq:NZ_ACVR01000033
NZ_ACVR01000067	30	25	0	5	24,938	RefSeq:NZ_ACVR01000067
NZ_ACVR01000003	18	17	1	0	21,830	RefSeq:NZ_ACVR01000003
NZ_ACVR01000054	14	13	1	0	18,678	RefSeq:NZ_ACVR01000054
NZ_ACVR01000053	19	15	0	4	18,308	RefSeq:NZ_ACVR01000053
NZ_ACVR01000079	18	16	1	1	15,545	RefSeq:NZ_ACVR01000079
NZ_ACVR01000081	12	12	0	0	14,707	RefSeq:NZ_ACVR01000081
NZ_ACVR01000031	14	14	0	0	14,621	RefSeq:NZ_ACVR01000031
NZ_ACVR01000008	18	16	0	2	14,188	RefSeq:NZ_ACVR01000008
NZ_ACVR01000057	15	14	0	1	12,430	RefSeq:NZ_ACVR01000057
NZ_ACVR01000039	12	12	0	0	11,522	RefSeq:NZ_ACVR01000039
NZ_ACVR01000023	14	13	0	1	10,161	RefSeq:NZ_ACVR01000023
NZ_ACVR01000049	13	12	0	1	10,013	RefSeq:NZ_ACVR01000049
NZ_ACVR01000051	12	12	0	0	6,863	RefSeq:NZ_ACVR01000051
35 Undisplayed Contigs/Replicons	145	139	6	9	154,390

Total:	3,133	2,996	67	70	3,283,705

Ortholog data available?	Yes

Database Contents

Genes	3,133
Pathways	265
Enzymatic Reactions	1,323
Transport Reactions	61
Polypeptides	3,028
Protein Complexes	65
Enzymes	726
Transporters	276
Compounds	998
Transcription Units	2,133
tRNAs	60
Protein Features	3,674
GO Terms	245

Database Version

29.0

Sequence Source	GCF_000175675.1
Synonyms	Acinetobacter radioresistens strain SK82 Acinetobacter radioresistens str. SK82 Acinetobacter radioresistens SK82
Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter radioresistens Acinetobacter radioresistens SK82
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN00001943
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	596318
Environment	biological product [ENVO:02000043]
Host	Homo sapiens
Annotation Provider	NCBI RefSeq
Annotation Date	2022-05-16
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version	6.1
Annotation Comment	Best-placed reference protein set; GeneMarkS-2+

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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