Database Authors
Pallavi Subhraveti1, Peter Midford, Ingrid Keseler1, Anamika Kothari1, Ron Caspi1, Peter D Karp1
1SRI International
Summary This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii AB_TG27323, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_AMIN0100009530429266353,947RefSeq:NZ_AMIN01000095
NZ_AMIN0100005732130957336,406RefSeq:NZ_AMIN01000057
NZ_AMIN01000048317302123312,511RefSeq:NZ_AMIN01000048
NZ_AMIN0100003924924315255,861RefSeq:NZ_AMIN01000039
NZ_AMIN0100000620520302211,225RefSeq:NZ_AMIN01000006
NZ_AMIN01000038197182114206,346RefSeq:NZ_AMIN01000038
NZ_AMIN0100008717116713184,408RefSeq:NZ_AMIN01000087
NZ_AMIN0100008817116182177,990RefSeq:NZ_AMIN01000088
NZ_AMIN0100002615815314163,931RefSeq:NZ_AMIN01000026
NZ_AMIN0100002815614925160,500RefSeq:NZ_AMIN01000028
NZ_AMIN0100009715214813155,977RefSeq:NZ_AMIN01000097
NZ_AMIN0100006312312003133,579RefSeq:NZ_AMIN01000063
NZ_AMIN0100007013813530124,941RefSeq:NZ_AMIN01000070
NZ_AMIN0100007311110731118,993RefSeq:NZ_AMIN01000073
NZ_AMIN0100004110810512114,204RefSeq:NZ_AMIN01000041
NZ_AMIN0100004712612402111,718RefSeq:NZ_AMIN01000047
NZ_AMIN0100004312111812111,026RefSeq:NZ_AMIN01000043
NZ_AMIN010000121009901107,989RefSeq:NZ_AMIN01000012
NZ_AMIN0100006872690372,815RefSeq:NZ_AMIN01000068
NZ_AMIN0100005364604063,062RefSeq:NZ_AMIN01000053
NZ_AMIN0100007746430354,548RefSeq:NZ_AMIN01000077
NZ_AMIN0100009648470150,125RefSeq:NZ_AMIN01000096
NZ_AMIN0100005836360043,853RefSeq:NZ_AMIN01000058
NZ_AMIN0100010339390042,738RefSeq:NZ_AMIN01000103
NZ_AMIN0100005229290031,850RefSeq:NZ_AMIN01000052
NZ_AMIN0100003528260230,792RefSeq:NZ_AMIN01000035
NZ_AMIN0100008228243128,079RefSeq:NZ_AMIN01000082
NZ_AMIN0100006426241127,984RefSeq:NZ_AMIN01000064
NZ_AMIN0100004928280026,695RefSeq:NZ_AMIN01000049
NZ_AMIN0100004624220224,852RefSeq:NZ_AMIN01000046
NZ_AMIN0100001921150617,570RefSeq:NZ_AMIN01000019
NZ_AMIN0100006712100214,301RefSeq:NZ_AMIN01000067
NZ_AMIN0100000912110114,105RefSeq:NZ_AMIN01000009
NZ_AMIN0100005512100210,576RefSeq:NZ_AMIN01000055
NZ_AMIN010000031410049,517RefSeq:NZ_AMIN01000003
68 Undisplayed Contigs/Replicons373364657,157
Total:3,8523,653701293,962,171
Ortholog data available?Yes
Database Contents
Genes3,850
Pathways261
Enzymatic Reactions1,298
Transport Reactions112
Polypeptides3,669
Protein Complexes53
Enzymes805
Transporters366
Compounds1,054
Transcription Units2,698
tRNAs62
GO Terms2,388
Database Version29.0
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Gammaproteobacteria
Moraxellales
Moraxellaceae
Acinetobacter
Acinetobacter calcoaceticus/baumannii complex
Acinetobacter baumannii
Acinetobacter baumannii AB_TG27323
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN02471231
NCBI BioProjectPRJNA224116
NCBI-Taxonomy1221283
Annotation ProviderNCBI
Annotation Date2017-11-23
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version4.3
Annotation CommentBest-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

Report Errors or Provide Feedback
Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.