Summary of Acetobacteraceae bacterium AT-5844, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Quang Ong¹, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 20-Sep-2017 from the annotated genome of Acetobacteraceae bacterium AT-5844, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 21.5) [Karp16, Karp11] using MetaCyc version 21.1 [Caspi16]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_JH599972	219	217	0	2	244,277	RefSeq:NZ_JH599972
NZ_JH599958	204	195	0	9	228,542	RefSeq:NZ_JH599958
NZ_JH599974	220	215	0	5	211,403	RefSeq:NZ_JH599974
NZ_JH599961	204	199	2	3	194,597	RefSeq:NZ_JH599961
NZ_JH600053	168	164	0	4	193,947	RefSeq:NZ_JH600053
NZ_JH599934	171	168	0	3	190,660	RefSeq:NZ_JH599934
NZ_JH599963	128	124	2	2	131,393	RefSeq:NZ_JH599963
NZ_JH599955	121	119	1	1	127,882	RefSeq:NZ_JH599955
NZ_JH599999	99	95	3	1	100,609	RefSeq:NZ_JH599999
NZ_JH600062	87	86	1	0	97,567	RefSeq:NZ_JH600062
NZ_JH599969	88	85	2	1	88,802	RefSeq:NZ_JH599969
NZ_JH599920	83	82	0	1	83,683	RefSeq:NZ_JH599920
NZ_JH600030	77	73	1	3	81,938	RefSeq:NZ_JH600030
NZ_JH600049	82	82	0	0	81,373	RefSeq:NZ_JH600049
NZ_JH599922	64	64	0	0	80,694	RefSeq:NZ_JH599922
NZ_JH599944	79	77	2	0	80,304	RefSeq:NZ_JH599944
NZ_JH600052	80	77	0	3	76,403	RefSeq:NZ_JH600052
NZ_JH600064	68	67	0	1	76,184	RefSeq:NZ_JH600064
NZ_JH599935	65	65	0	0	74,055	RefSeq:NZ_JH599935
NZ_JH599949	66	65	0	1	71,267	RefSeq:NZ_JH599949
NZ_JH599941	68	64	2	2	68,402	RefSeq:NZ_JH599941
NZ_JH599959	66	64	0	2	67,683	RefSeq:NZ_JH599959
NZ_JH600059	63	61	1	1	65,186	RefSeq:NZ_JH600059
NZ_JH600013	55	55	0	0	63,315	RefSeq:NZ_JH600013
NZ_JH599973	49	46	0	3	57,424	RefSeq:NZ_JH599973
NZ_JH599928	54	54	0	0	55,526	RefSeq:NZ_JH599928
NZ_JH599940	47	45	0	2	54,921	RefSeq:NZ_JH599940
NZ_JH600015	57	52	1	4	53,850	RefSeq:NZ_JH600015
NZ_JH599927	54	51	1	2	50,197	RefSeq:NZ_JH599927
NZ_JH599966	38	35	0	3	50,008	RefSeq:NZ_JH599966
NZ_JH599971	44	43	0	1	47,589	RefSeq:NZ_JH599971
NZ_JH600021	43	42	1	0	46,810	RefSeq:NZ_JH600021
NZ_JH599985	42	39	1	2	45,794	RefSeq:NZ_JH599985
NZ_JH599950	49	43	1	5	45,683	RefSeq:NZ_JH599950
NZ_JH599964	45	43	1	1	45,256	RefSeq:NZ_JH599964
NZ_JH599919	43	42	0	1	45,231	RefSeq:NZ_JH599919
NZ_JH599933	43	40	1	2	44,346	RefSeq:NZ_JH599933
NZ_JH599975	38	35	1	2	41,388	RefSeq:NZ_JH599975
NZ_JH599921	39	38	0	1	40,586	RefSeq:NZ_JH599921
NZ_JH600004	41	38	0	3	40,360	RefSeq:NZ_JH600004
NZ_JH599968	40	36	0	4	40,128	RefSeq:NZ_JH599968
NZ_JH599923	34	34	0	0	38,597	RefSeq:NZ_JH599923
NZ_JH600023	34	32	0	2	38,055	RefSeq:NZ_JH600023
NZ_JH599987	31	29	2	0	36,293	RefSeq:NZ_JH599987
NZ_JH599962	32	31	0	1	36,125	RefSeq:NZ_JH599962
NZ_JH599979	34	32	0	2	35,824	RefSeq:NZ_JH599979
NZ_JH600024	29	28	0	1	35,672	RefSeq:NZ_JH600024
NZ_JH599942	32	29	3	0	35,540	RefSeq:NZ_JH599942
NZ_JH600044	29	27	0	2	34,839	RefSeq:NZ_JH600044
NZ_JH600065	29	28	0	1	34,603	RefSeq:NZ_JH600065
NZ_JH599967	30	28	1	1	34,027	RefSeq:NZ_JH599967
NZ_JH599976	33	33	0	0	33,791	RefSeq:NZ_JH599976
NZ_JH599917	27	26	0	1	33,056	RefSeq:NZ_JH599917
NZ_JH599948	27	26	0	1	32,733	RefSeq:NZ_JH599948
NZ_JH600043	28	28	0	0	32,268	RefSeq:NZ_JH600043
NZ_JH600056	26	25	0	1	31,715	RefSeq:NZ_JH600056
NZ_JH599910	33	31	0	2	31,001	RefSeq:NZ_JH599910
NZ_JH599929	33	30	2	1	30,861	RefSeq:NZ_JH599929
NZ_JH600026	28	27	0	1	30,780	RefSeq:NZ_JH600026
NZ_JH600061	30	29	0	1	30,259	RefSeq:NZ_JH600061
NZ_JH599932	18	18	0	0	29,166	RefSeq:NZ_JH599932
NZ_JH599998	27	26	0	1	27,771	RefSeq:NZ_JH599998
NZ_JH599953	23	22	0	1	27,043	RefSeq:NZ_JH599953
NZ_JH600016	26	23	1	2	26,595	RefSeq:NZ_JH600016
NZ_JH599994	20	20	0	0	26,134	RefSeq:NZ_JH599994
NZ_JH599980	21	19	0	2	25,772	RefSeq:NZ_JH599980
NZ_JH599952	23	19	1	3	23,336	RefSeq:NZ_JH599952
NZ_JH600041	19	18	0	1	23,221	RefSeq:NZ_JH600041
NZ_JH599911	18	16	1	1	22,957	RefSeq:NZ_JH599911
NZ_JH599996	21	19	0	2	22,822	RefSeq:NZ_JH599996
NZ_JH599916	30	27	0	3	22,264	RefSeq:NZ_JH599916
NZ_JH600057	22	21	0	1	22,050	RefSeq:NZ_JH600057
NZ_JH600027	19	18	0	1	21,163	RefSeq:NZ_JH600027
NZ_JH599938	17	16	0	1	20,166	RefSeq:NZ_JH599938
NZ_JH600020	18	17	1	0	20,064	RefSeq:NZ_JH600020
NZ_JH599912	18	17	0	1	19,559	RefSeq:NZ_JH599912
NZ_JH599930	20	19	0	1	19,146	RefSeq:NZ_JH599930
NZ_JH599937	22	22	0	0	18,717	RefSeq:NZ_JH599937
NZ_JH599931	22	20	0	2	18,693	RefSeq:NZ_JH599931
NZ_JH600040	18	17	1	0	17,957	RefSeq:NZ_JH600040
NZ_JH600000	14	14	0	0	17,652	RefSeq:NZ_JH600000
NZ_JH599970	15	15	0	0	17,136	RefSeq:NZ_JH599970
NZ_JH599947	20	18	1	1	16,899	RefSeq:NZ_JH599947
NZ_JH600050	13	13	0	0	16,446	RefSeq:NZ_JH600050
NZ_JH600007	14	13	0	1	16,359	RefSeq:NZ_JH600007
NZ_JH599926	29	29	0	0	15,807	RefSeq:NZ_JH599926
NZ_JH599965	17	16	0	1	14,992	RefSeq:NZ_JH599965
NZ_JH599918	13	13	0	0	14,844	RefSeq:NZ_JH599918
NZ_JH599936	12	12	0	0	14,755	RefSeq:NZ_JH599936
NZ_JH600012	13	11	0	2	14,338	RefSeq:NZ_JH600012
NZ_JH600036	15	15	0	0	13,687	RefSeq:NZ_JH600036
NZ_JH599988	12	12	0	0	12,575	RefSeq:NZ_JH599988
NZ_JH600034	12	11	0	1	12,086	RefSeq:NZ_JH600034
NZ_JH600002	17	15	0	2	11,865	RefSeq:NZ_JH600002
NZ_JH599939	15	13	1	1	11,765	RefSeq:NZ_JH599939
62 Undisplayed Contigs/Replicons	210	200	10	49	283,449

Total:	4,882	4,652	50	180	5,190,553

Ortholog data available?	Yes

Database Contents

Genes	4,883
Pathways	245
Enzymatic Reactions	1,451
Transport Reactions	74
Polypeptides	4,693
Protein Complexes	34
Enzymes	1,024
Transporters	670
Compounds	1,161
Transcription Units	3,106
tRNAs	44
Protein Features	5,643
GO Terms	19,052

Database Version

29.0

Sequence Source	ABAC1054213
Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Alphaproteobacteria Rhodospirillales Acetobacteraceae unclassified Acetobacteraceae Acetobacteraceae bacterium AT-5844
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02299459
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	1054213
Environment	biological product [ENVO:02000043]
Host	Homo sapiens
Human Microbiome Body Site	skin

References

Caspi16: Caspi R, Billington R, Ferrer L, Foerster H, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Karp PD (2016). "The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases." Nucleic Acids Res 44(D1);D471-80. PMID: 26527732

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

Report Errors or Provide Feedback
Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC17.

References

General Information

Data and Services

Credits

Follow Us

Select One or More Databases:

Current Selection

Search

Genome

SmartTables

Metabolism

Analysis

References