Database Authors
Pallavi Subhraveti1, Peter Midford1, Anamika Kothari1, Ron Caspi1, Peter D Karp1
1SRI International
Summary This Pathway/Genome Database (PGDB) was generated on 01-June-2022 from the annotated genome of Acinetobacter lwoffii SH145, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 26.0) [Karp16, Karp11] using MetaCyc version 26.0 [Caspi20]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutes of Health.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_GG705055374357125410,644RefSeq:NZ_GG705055
NZ_GG705056394379312409,732RefSeq:NZ_GG705056
NZ_GG70505726425545304,045RefSeq:NZ_GG705057
NZ_GG705058257235148268,087RefSeq:NZ_GG705058
NZ_GG70505924924225263,842RefSeq:NZ_GG705059
NZ_GG705060220210010261,824RefSeq:NZ_GG705060
NZ_GG705061221200147233,240RefSeq:NZ_GG705061
NZ_GG70506215614736181,688RefSeq:NZ_GG705062
NZ_GG70506315914973171,684RefSeq:NZ_GG705063
NZ_GG70506414814701167,894RefSeq:NZ_GG705064
NZ_GG70506513713043130,343RefSeq:NZ_GG705065
NZ_GG705066918254106,208RefSeq:NZ_GG705066
NZ_GG70506784810399,840RefSeq:NZ_GG705067
NZ_GG705068836302085,653RefSeq:NZ_GG705068
NZ_GG70506943420154,571RefSeq:NZ_GG705069
NZ_GG70507037300753,557RefSeq:NZ_GG705070
NZ_GG70507151490249,526RefSeq:NZ_GG705071
NZ_GG705072231201135,758RefSeq:NZ_GG705072
NZ_GG70507337350232,703RefSeq:NZ_GG705073
NZ_GG70507425190627,739RefSeq:NZ_GG705074
NZ_GG7050751190212,466RefSeq:NZ_GG705075
NZ_GG7050761010009,753RefSeq:NZ_GG705076
NZ_GG7050781212009,578RefSeq:NZ_GG705078
53 Undisplayed Contigs/Replicons7673416100,629
Total:3,1792,968721393,481,004
Ortholog data available?Yes
Database Contents
Genes3,178
Pathways242
Enzymatic Reactions1,254
Transport Reactions53
Polypeptides3,053
Protein Complexes55
Enzymes709
Transporters252
Compounds927
Transcription Units2,329
tRNAs64
Protein Features3,632
GO Terms214
Database Version29.0
Sequence SourceGCF_000162095.1
Synonyms Acinetobacter lwoffii strain SH145
Acinetobacter lwoffii str. SH145
Acinetobacter lwoffii SH145
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Gammaproteobacteria
Moraxellales
Moraxellaceae
Acinetobacter
Acinetobacter lwoffii
Acinetobacter lwoffii SH145
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN02463731
NCBI BioProjectPRJNA224116
NCBI-Taxonomy575588
Environmentbiological product [ENVO:02000043]
HostHomo sapiens
Annotation ProviderNCBI RefSeq
Annotation Date2021-11-7
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version5.3
Annotation CommentBest-placed reference protein set; GeneMarkS-2+

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.