Summary of Acetobacter aceti NBRC 14818 (GCF

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford¹, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 13-Mar-2021 from the annotated genome of Acetobacter aceti NBRC 14818, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 25.0) [Karp16, Karp11] using MetaCyc version 24.5 [Caspi20]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutes of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_BAMU01000017	288	282	3	3	339,437	RefSeq:NZ_BAMU01000017
NZ_BAMU01000006	255	248	5	2	292,681	RefSeq:NZ_BAMU01000006
NZ_BAMU01000002	250	244	3	3	289,192	RefSeq:NZ_BAMU01000002
NZ_BAMU01000018	176	173	2	1	191,905	RefSeq:NZ_BAMU01000018
NZ_BAMU01000014	163	157	6	0	172,781	RefSeq:NZ_BAMU01000014
NZ_BAMU01000010	150	146	2	2	162,293	RefSeq:NZ_BAMU01000010
NZ_BAMU01000009	144	141	3	0	160,703	RefSeq:NZ_BAMU01000009
NZ_BAMU01000022	136	130	4	2	142,879	RefSeq:NZ_BAMU01000022
NZ_BAMU01000003	125	124	1	0	135,114	RefSeq:NZ_BAMU01000003
NZ_BAMU01000012	114	111	1	2	122,104	RefSeq:NZ_BAMU01000012
NZ_BAMU01000062	96	94	2	0	106,237	RefSeq:NZ_BAMU01000062
NZ_BAMU01000030	79	78	1	0	97,514	RefSeq:NZ_BAMU01000030
NZ_BAMU01000020	72	71	0	1	90,645	RefSeq:NZ_BAMU01000020
NZ_BAMU01000040	74	72	1	1	82,067	RefSeq:NZ_BAMU01000040
NZ_BAMU01000057	67	63	1	3	76,710	RefSeq:NZ_BAMU01000057
NZ_BAMU01000054	57	55	0	2	66,378	RefSeq:NZ_BAMU01000054
NZ_BAMU01000015	63	59	1	3	66,113	RefSeq:NZ_BAMU01000015
NZ_BAMU01000034	69	67	0	2	64,978	RefSeq:NZ_BAMU01000034
NZ_BAMU01000011	54	53	0	1	54,556	RefSeq:NZ_BAMU01000011
NZ_BAMU01000047	37	35	0	2	47,099	RefSeq:NZ_BAMU01000047
NZ_BAMU01000004	39	36	0	3	41,174	RefSeq:NZ_BAMU01000004
NZ_BAMU01000084	34	33	0	1	38,670	RefSeq:NZ_BAMU01000084
NZ_BAMU01000013	36	33	2	1	37,756	RefSeq:NZ_BAMU01000013
NZ_BAMU01000008	32	30	0	2	37,502	RefSeq:NZ_BAMU01000008
NZ_BAMU01000021	33	30	0	3	37,151	RefSeq:NZ_BAMU01000021
NZ_BAMU01000045	32	30	1	1	36,997	RefSeq:NZ_BAMU01000045
NZ_BAMU01000051	33	32	1	0	36,567	RefSeq:NZ_BAMU01000051
NZ_BAMU01000007	29	28	0	1	31,878	RefSeq:NZ_BAMU01000007
NZ_BAMU01000035	33	32	1	0	31,782	RefSeq:NZ_BAMU01000035
NZ_BAMU01000058	29	27	0	2	31,600	RefSeq:NZ_BAMU01000058
NZ_BAMU01000061	25	25	0	0	30,444	RefSeq:NZ_BAMU01000061
NZ_BAMU01000104	30	27	1	2	29,294	RefSeq:NZ_BAMU01000104
NZ_BAMU01000065	25	23	1	1	25,812	RefSeq:NZ_BAMU01000065
NZ_BAMU01000048	19	18	0	1	25,157	RefSeq:NZ_BAMU01000048
NZ_BAMU01000036	24	24	0	0	22,534	RefSeq:NZ_BAMU01000036
NZ_BAMU01000033	13	13	0	0	18,723	RefSeq:NZ_BAMU01000033
NZ_BAMU01000193	17	15	1	1	18,035	RefSeq:NZ_BAMU01000193
NZ_BAMU01000077	14	13	0	1	17,868	RefSeq:NZ_BAMU01000077
NZ_BAMU01000052	16	15	0	1	17,587	RefSeq:NZ_BAMU01000052
NZ_BAMU01000016	13	13	0	0	14,072	RefSeq:NZ_BAMU01000016
NZ_BAMU01000001	12	10	0	2	13,952	RefSeq:NZ_BAMU01000001
NZ_BAMU01000123	11	11	0	0	8,470	RefSeq:NZ_BAMU01000123
167 Undisplayed Contigs/Replicons	147	140	7	52	188,774

Total:	3,217	3,061	51	105	3,553,185

Ortholog data available?	Yes

Database Contents

Genes	3,217
Pathways	237
Enzymatic Reactions	1,174
Transport Reactions	59
Polypeptides	3,142
Protein Complexes	37
Enzymes	712
Transporters	294
Compounds	876
Transcription Units	2,239
tRNAs	44
Protein Features	3,674
GO Terms	2

Database Version

29.0

Sequence Source	GCF_000963905.1
Synonyms	Acetobacter aceti DSM 3508 Acetobacter aceti JCM 7461 Acetobacter aceti LMG 1261 Acetobacter aceti LMG 1504 Acetobacter aceti NCIB 8621 Acetobacter aceti str. NBRC 14818 Acetobacter aceti strain NBRC 14818 Acetobacter aceti NBRC 14818
Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Alphaproteobacteria Rhodospirillales Acetobacteraceae Acetobacter Acetobacter subgen. Acetobacter Acetobacter aceti Acetobacter aceti NBRC 14818
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMD00036630
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	887700
Annotation Provider	NCBI RefSeq
Annotation Date	2021-01-5
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version	5.0
Annotation Comment	Best-placed reference protein set; GeneMarkS-2+

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC17.

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